Clavibacter michiganensis subsp. michiganensis: CMM_2651
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Entry
CMM_2651 CDS
T00529
Symbol
sigF
Name
(GenBank) putative RNA polymerase sigma factor, SigF-homolog (stress response/stationary phase sigma factor)
KO
K03090
RNA polymerase sigma-B factor
Organism
cmi
Clavibacter michiganensis subsp. michiganensis
Brite
KEGG Orthology (KO) [BR:
cmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmi03021
]
CMM_2651 (sigF)
Transcription machinery [BR:
cmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMM_2651 (sigF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
KORA
MarR_2
HTH_Crp_2
HTH_23
MarR
HTH_38
DUF7343
HTH_3
YdaS_toxin
UPF0122
HTH_15
Motif
Other DBs
NCBI-ProteinID:
CAN02734
UniProt:
A5CUE7
LinkDB
All DBs
Position
2981390..2982397
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AA seq
335 aa
AA seq
DB search
MTGTLRTRALAAAPPASRGSASRASASAIPLSTTLPRPTNLPRPTPLAPDLTAARDEKRR
LTHDRFVRAAAAAEDPAGDAERRRLHDQIVLDHLELADQLARQHSGRAHDWSDLRQVGYL
GLVKAARRYDPGFGAPFVSFAIPTISGEIKRHLRDNGWVVRPPRHVQELRHALLAVVPAL
TQRLGRTPTDAELAAHTGHAREEVVEALAAHSSLRPASLDFTVHEDEGISLADTIGADDP
GYARAERTVLLDAARGVLSDRDRRILHLRFVDECSQSEIAAELGVTQMQVSRLLARILGA
LRAELTRGEAEALPEVAPLAAVSPIRVREADRRTA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggaacgctgcgcacgcgcgccctcgccgccgccccgcccgcctcgcgcggatcc
gcctcccgcgcatccgcgtcggcgatcccgctgtcgacgacgctcccccgcccgacgaac
ctcccccgcccgaccccgctcgcgcccgacctcacggcggcgcgggacgagaagcgccgg
ctgacccacgaccggttcgtgcgcgcggccgccgcggccgaggatccggcgggcgacgcc
gaacgccgccgcctgcacgaccagatcgtgctcgaccacctcgagctcgccgaccagctc
gcccgccagcactcgggccgcgcccacgactggagcgacctccgacaggtcggctacctc
ggcctcgtgaaggccgcgcgccgctacgacccggggttcggcgcgcccttcgtgtcgttc
gcgatccccaccatctccggcgagatcaagcgccacctgcgcgacaacgggtgggtggtc
cgcccgccccggcacgtccaggagctgcggcacgcgctgctcgcggtcgtgcccgcgctc
acgcagcggctcggccgcacgcccaccgacgccgagctcgcggcccacaccgggcacgcg
cgcgaggaggtcgtcgaggcgctcgctgcgcactccagcctccggcccgcgtcgctcgac
ttcacggtgcacgaggacgagggcatctcgctcgcggacacgatcggcgccgacgacccc
ggctacgcgcgggccgagcgcaccgtgctgctggacgcggcgcgcggcgtgctcagcgat
cgcgaccggcggatcctgcacctgcgcttcgtcgacgagtgcagccagtcggagatcgcg
gccgagctcggcgtgacgcagatgcaggtgtcgcggctgctcgcgcggatcctcggggcg
ttgcgcgccgagctcacgcgcggcgaggcggaggccctgccggaggtggcgccgctcgcc
gccgtgtcgccgatccgcgtgcgcgaggccgaccgccgcacggcctga
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