Caldinitratiruptor microaerophilus: caldi_05000
Help
Entry
caldi_05000 CDS
T08566
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cmic
Caldinitratiruptor microaerophilus
Pathway
cmic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
caldi_05000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmic03019
]
caldi_05000
03016 Transfer RNA biogenesis [BR:
cmic03016
]
caldi_05000
Enzymes [BR:
cmic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
caldi_05000
Messenger RNA biogenesis [BR:
cmic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
caldi_05000
Transfer RNA biogenesis [BR:
cmic03016
]
Prokaryotic type
tRNA degradation factors
caldi_05000
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BDG59410
UniProt:
A0AA35CLC0
LinkDB
All DBs
Position
525323..527578
Genome browser
AA seq
751 aa
AA seq
DB search
MEPREFRMTLGGRELVLETGRLAKQAGGSVLVRYGDTVVLVTATASAQPREGVDFFPLTV
DYEERLYAVGKIPGNWFRREGKPTTKAILNARLTDRPIRPLFPDGFRNDVQVICTVLSVD
PDCAPEFCAMVGASAALHISDIPWEGPIGACIVGRVDGEFVVNPTAEQAERSEMHLVVAA
TDKAVLMVEAGAREVPEEIMLEGILFGHEVSRQVIRLIEEMRQAVGKPKRDVPLYRPPAE
LEQAVRELATEPLRRALVENPGKQAREEAIAQVGADVHAALAERFPDQEKDISALLKTIL
KEEVRRAILRHGIRPDGRRLDEIRPLHIEVGVLPRTHGSGLFQRGQTQVLSVCTLGTVSD
VQRLDDLTLEEFKRYMHHYNFPPFSVGETRPMRGPGRREIGHGALAERALEPVLPSEDEF
PYTIRVVSEVLESNGSTSMASTCGSTLALMDAGVPIKAPVAGIAMGLVEGEPGEFAVLTD
IQGIEDALGDMDFKVAGTRKGVTALQMDMKISGTTREVFEKALTQARQARLFILDEMLKV
LPAPRPELSPWAPRIITMKVHPDKIREVIGPGGKMINKIIAECAVNGRKPEIDIEDDGTV
HIAAVNVEAGEKARRMIEALVKDPEPGSIYTGKVVRLMNFGAFVEILPGKEGLVHISELA
EGRVERVEDVVNIGDELTVMVTEIDKLGRINLSRKAVLRAEREKRGEPLPAGAVRRDRDG
RPGRPAAPPPPARGDRPPGRHGDRRPDRGRR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
gtggagccccgagagtttcgcatgacgctgggcggccgggaactggtcctcgagaccggc
cgtctggcgaaacaggcggggggatcggtgctcgtgcgctacggcgacaccgtcgtgctg
gtcacggccaccgcgtccgcccagccccgggaaggggtcgacttcttcccgctcaccgtc
gactacgaggaacgcctgtacgcggtgggcaagatccccggcaactggttccggcgggag
ggcaagcccaccaccaaggcgatcctgaacgcccggctcaccgaccgcccgatccgcccg
ctgttcccggacggcttccggaacgacgtccaggtgatctgcacggtgctgagcgtcgac
cccgactgcgcgccggagttctgcgcgatggtcggcgcctccgcggccctccacatctcg
gacatcccgtgggagggcccgatcggcgcgtgcatcgtggggcgggtggacggcgagttc
gtggtgaaccccaccgccgaacaggccgagcgcagcgagatgcacctcgtcgtggcggcg
accgacaaggccgtgctcatggtggaggccggcgccagggaagtgcccgaggagatcatg
ctcgagggcatcctcttcggccacgaggtgtcccgccaggtcatccggctgatcgaggag
atgcgccaggccgtcggcaagcccaagcgcgacgtgcccctgtaccggccgccggccgag
ctggagcaggccgtgcgtgagctggccacggagcccctgcgccgggcgctggtggagaac
ccgggcaagcaggcccgggaggaggccatcgcccaggtcggcgcggacgtgcacgccgcc
ctggcggagcggttcccggaccaggagaaggacatctcggcgctgctcaagacgatcctg
aaagaggaggtccgccgggcgatcctccggcacggcatccgccccgacggccggcggctg
gacgagatccggcccctgcacatcgaggtcggggtgctgccccgcacccacggctccggg
ctgttccagcgcggccagacccaggtcctgagcgtgtgcaccctgggcacggtctccgac
gtgcagcgcctggacgacctcaccctcgaggagttcaagcggtacatgcaccactacaac
ttccccccgttctcggtcggcgagacccggccgatgcgcggcccggggcgccgggagatc
ggccacggggcgctggccgagcgggcgctggagccggtgctgccgtcggaggacgagttc
ccgtacacgatccgggtcgtctccgaggtgctcgagtcgaacggctcgacctccatggcg
tccacgtgcgggtcgacgctcgccctgatggacgccggggtgcccatcaaggcgccggtg
gccggcatcgccatgggcctcgtggagggcgagccgggggagttcgccgtgctgacggac
atccagggcatcgaggacgccctgggggacatggacttcaaggtggcgggcacccgcaag
ggcgtgaccgccctgcagatggacatgaagatctccggcaccacccgggaggtcttcgag
aaggccctcacgcaagcccgccaggcccgcctgttcatcctggacgagatgctcaaggtc
ctccccgccccgcggccggaactctccccgtgggccccgcggatcatcacgatgaaggtg
cacccggacaagatccgcgaggtgatcggccccggcgggaagatgatcaacaagatcatc
gccgagtgcgcggtgaacgggcgcaagccggagatcgacatcgaggacgacggcaccgtg
cacatcgccgccgtgaacgtcgaggccggcgagaaggcccgccgcatgatcgaggcgctc
gtcaaggaccccgaacccgggagcatctacaccggcaaggtggtccggctcatgaacttc
ggcgccttcgtggagatcctcccggggaaggaagggctcgtgcacatcagcgagctggcc
gaggggcgcgtcgagcgggtcgaggacgtggtgaacatcggcgacgagctcaccgtcatg
gtgacggagatcgacaagctcgggcgcatcaacctctcccggaaggcggtgctccgggcc
gagcgggagaagcgcggcgaaccgctgcccgccggcgccgtgcgccgggaccgggacggc
cggccgggccggcccgcagcgcccccgccgccggcccggggcgaccggccgcccggaagg
cacggggaccgaaggccggacagggggcggcgctag
DBGET
integrated database retrieval system
