Caldinitratiruptor microaerophilus: caldi_15880
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Entry
caldi_15880 CDS
T08566
Symbol
addB
Name
(GenBank) ATP-dependent helicase/deoxyribonuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
cmic
Caldinitratiruptor microaerophilus
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmic03400
]
caldi_15880 (addB)
Enzymes [BR:
cmic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
caldi_15880 (addB)
DNA repair and recombination proteins [BR:
cmic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
caldi_15880 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
BDG60498
UniProt:
A0AA35G8J3
LinkDB
All DBs
Position
complement(1591393..1594941)
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AA seq
1182 aa
AA seq
DB search
MGRAGTGKTRLFLDAIEAELKRAPDGPPLILLVPEQATFQMEQALLARVPGFVRAHVLSF
RRLAWRVLTEVGGAARPAIGELGRRMVLRALLARRAGELRLFRRVAGRPGFPGRLARSLS
EMHAYGVTPDRLEAARRALEEAGAGDSPLAAKLHDLALLFADFRAYLAGRFTDPDDSLTL
LARQLPSSSLVRGAEVRVDGFQGFTPQEFAVLEALLPVARRVEVALTLDGRLLDRLDAGV
EPAPEDVFHPTAATYVRLRRIARQQGVRVEPPRVLDGGDPPVRFRAAPALAHLERAYFDP
GAVPLSGPAPEVALVTARNRRAEVEAAAREILRLVREEGYRFRDIAVIVRDLGEYHDLVA
AVFASQGIPHFVDRRRPVLHHPLVELVRSALEVVISDWAYEPVFRLLKTDLVPVPRADVD
VLENYVLEHGIRGPAWYRPEPWRFRRRFTLDEDGGPSEAEAAWLAEVNRIRDGATAALRE
LQERLGPARRAPAPVRALAEALHGFLEALGVHGQLLHWSAEADARGDPDAAQEHMQVYGG
VLELLDQVVESLGDQAMTLAEFLEVVEAGLEGLEVGLIPPGLDQVVVGSVERSRHPDLRA
AFVLGVADGVFPRAGSEDVILSDPDRDRLAELGLELGPTARQVTLEEQFRVYLALTRARE
RLWLSCPLADDRGRAVWPSSVFVRVQELLPEAPRRHMEAAGEDDPAGAATIPELAGRVAA
RLRRALEPSSAGFPATGTGPMGVSGESLEPWLKVYQWLVTDPAAAPLARPVLSSLAYRND
PPPVDPEVAGRLYGGPVIRTSVTRLESLAACPFQHFAAHGLGLRERAVFQVGPPQLGFVQ
HAALQRLAHDLERDPAGWEGLDAAEAERRIGALLDDLAPRLRGEGLVPTGLERYLMRQVR
RSLAGAVLVLAEHARRGRFRPVAVELPFGEADGLPGLAVAGPGGRQVVLRGRIDRVDAAE
GPGGRLYLRVVDYKSTARALRAAELYHGLSLQLAVYLLVALAGADRLVGAPAEPAGLLYF
PLAAAPLSGSGPVSPEEALAAWRRALRMRGVVLADPAVVRLMEAEGAGELVPARIKKDGQ
VDSRSGALPPARLRRLLRHVRGRLAGLVGQMLAGDVRIAPYRLGDATPCATCAYRAVCRL
DPRTERDRFRTLPRARDRDVWALLDDADGADPASRPDPAEEG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
gtggggcgggcgggaacgggaaagacgcggctcttcctggacgccatcgaggcggagctg
aagcgggcccccgacggcccgccgctcatcctgctggtgcccgagcaggccaccttccag
atggaacaggccctcctggcccgggtgcccggcttcgtgcgcgcacacgtcctgagcttc
cgccggctcgcatggcgtgtgctcacggaggtgggcggcgccgcccggcctgccatcggc
gaactcggccggcggatggtgctgcgcgcgctgctggcccggcgggcgggggaactccgg
ctcttccgccgcgtggccggccggcccgggttcccgggccgcctggcacgcagcctgagc
gagatgcacgcgtacggagtcacgccggaccgcctggaagccgcccggcgggccctcgag
gaggccggcgccggcgacagccccctggccgccaagctgcacgacctcgccctcctcttc
gccgacttccgggcgtacctcgccggccgcttcaccgacccggacgactcgctgaccctc
ctggcccgccagctcccctcctcgtcgctcgtccggggcgccgaggtccgggtcgacggt
tttcagggcttcaccccccaggagttcgccgtgctggaggcgctcttgccggtggcgcgc
cgggtcgaggtcgccctcacgctggacgggcgcctgctggaccggctcgacgccggtgtg
gagccggcgccggaggacgtcttccacccgaccgcggccacgtacgtgcggctgcgccgc
atcgcccggcagcagggggtccgggtcgagccgccgcgggtgctggacggcggtgaccct
cccgtgcgcttccgggccgccccggccctggcccacctcgagcgcgcgtacttcgatccc
ggggccgtgccgctcagcggtccggcgcccgaggtggccctggtcacggcacggaaccgc
cgtgccgaggtcgaggcggccgcccgcgagatcctgcggctcgtccgggaggaagggtac
cgcttccgggacatcgcggtcatcgtccgggacctgggggagtaccacgacctcgtcgct
gccgtcttcgcctcccaaggcatcccgcacttcgtcgaccggcgccggcccgtgcttcac
cacccgctggtggaactcgtccgctccgccctggaggtggtgatctcggactgggcctac
gagccggtcttccgcctgctcaagaccgacctggtccccgtgccccgggccgacgtggac
gtgctggagaactacgtgctggagcacggcatccgcgggccggcctggtaccggcccgag
ccgtggcggttccggcgccgcttcacgctcgacgaggacgggggaccgtccgaggcggag
gcggcctggctggccgaggtgaaccggatccgggacggggccacggcggccctgcgggag
ctgcaggagcggctcgggcccgcgcggcgcgcaccggcgccggtgcgcgccctggcggaa
gcccttcacggcttccttgaggcccttggcgtccacgggcagctcctccactggagtgcc
gaggccgacgcccgcggtgaccccgacgccgcccaggaacacatgcaggtgtacggcggc
gtgctggagctgctcgaccaggtggtcgagagcctcggcgaccaggcgatgaccctcgcg
gagttcctcgaggtggtggaggcgggcctggaggggctggaggtcggcctcatccccccg
gggctcgaccaggtcgtcgtggggtcggtggagcggtcccgccacccggacctgcgggcg
gcgttcgtcctcggcgtggcggacggggtgttcccccgggcggggtcggaggacgtgatc
ctgagcgaccccgaccgggaccggctcgccgagctcgggctcgagctcggccccaccgcc
cggcaggtgacgctggaggaacagttccgggtgtacctcgccctgacccgggcccgcgag
cgcctctggctgagctgccccctggccgatgaccggggccgcgcggtatggccgtcgtcg
gtgttcgtgcgggtgcaggaactcctgccggaggccccgcgccgccacatggaagcggcg
ggcgaggacgacccggccggggccgccaccatcccggagctggcggggcgggtggcggcg
cgcctgcgccgcgccctcgaaccctcgtccgcaggctttccggcaaccgggacgggcccg
atgggggtctccggcgaatccctggaaccctggctcaaggtgtaccagtggctggtcacg
gacccggccgcggcgcccctcgcgcgcccggtgctgtcgagcctcgcctaccggaacgac
ccaccgccggtagaccccgaggtggccgggcgcctgtacggggggccggtgatccgcacc
agcgtgacccgcctcgagagcctggccgcctgcccgttccagcacttcgccgcccacggg
ctggggctccgggagcgcgccgtgttccaggtggggccgccccagctggggttcgtgcag
cacgcggcgctgcagcgcctggcgcacgacctggagcgggaccccgccggctgggagggg
ctcgatgcggcggaggcggagcgccggatcggcgcgctcctggacgacctcgcgccgcgc
ctgcggggggaggggctcgtccccaccgggctcgagcgctacctcatgcggcaggtgcgc
cgctcgctcgccggggccgtcctggtgctcgccgagcacgcccgccgcgggcgcttccgc
ccggtggccgtcgagctgcccttcggggaggcggacggactgccggggctcgcggtggcg
gggccgggcggccggcaggtggtcctgcggggccggatcgaccgggtcgacgccgccgag
gggccgggcgggcgcctgtacctgcgggtggtcgactacaagagcaccgcccgcgcgctg
cgcgcggcggagctgtatcacgggctgtccctgcagctggccgtctacttgctggtcgcc
ctggccggggccgaccggctcgtgggcgcgccggccgagcccgccggcctgctgtacttc
ccgctggccgccgcgccgctctccgggtcgggcccggtgagtccggaggaggccctggcc
gcctggcgccgcgcgctgcgcatgcggggggtggtgctggcggacccggccgtggtccgg
ctcatggaggccgagggggccggggagctggtacccgcccggatcaagaaggacggccag
gtcgacagccgctccggggccctgccgcctgccaggttgcggcggctcctccgccacgtg
cgggggcgcctggccggtctggtggggcagatgctcgccggcgacgtgcggatcgccccg
taccggctgggcgatgccaccccgtgcgccacctgcgcgtaccgtgcggtgtgccggctc
gacccccgcaccgagcgcgaccggttccgcacgctcccccgcgcccgggaccgggacgtg
tgggcgctcctggacgatgcagacggggctgacccggcgagcaggccggacccggcggag
gaggggtga
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