Caldinitratiruptor microaerophilus: caldi_15920
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Entry
caldi_15920 CDS
T08566
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmic
Caldinitratiruptor microaerophilus
Pathway
cmic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
caldi_15920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmic03019
]
caldi_15920
03009 Ribosome biogenesis [BR:
cmic03009
]
caldi_15920
Enzymes [BR:
cmic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
caldi_15920
Messenger RNA biogenesis [BR:
cmic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
caldi_15920
Ribosome biogenesis [BR:
cmic03009
]
Prokaryotic type
rRNA helicases
caldi_15920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
AAA_19
CMS1
Cofac_haem_bdg
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
BDG60502
UniProt:
A0AA35CJY5
LinkDB
All DBs
Position
complement(1597329..1598924)
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AA seq
531 aa
AA seq
DB search
MDQATSYEKTSFQDLGISDRVLRALAEMGFEEPSPIQARAIPLLLAGKDLIGQAQTGTGK
TATFGVPIVEKIDPRVRATQALVLTPTRELAIQVAEEIGRIGRFSRVRVGPIYGGQSIER
QVRLLRAGLEVVVGTPGRIMDHMRRGVLSLDRLRILVLDEADEMLDMGFIEDIEWIIQQA
PQDRQTMLFSATMPEEIRRLAQRYMRDPEFVQVSPQQLTVPQIEQFFYEVRQALKTEALT
RILDAENVERAIIFCRTKKGVDELTEALQGRGYLAEGIHGDMNQAQRNRVMERFRGGQVE
LLVATDVAARGLDIEGVTHVINYDIPQDPESYVHRIGRTGRAGRSGTAITLITSREFPQL
RLIERGIRQRIQRRPLPSLADIAERQRETLKSRVLKALEEGHLGYFREVARDLLQEDYAA
EELLAAALKVAAGDQAPPAPLPTDFGETGAEPGFVRFFINIGRAQGVQPADIVRSIAGQA
GIPGHVIGTIDIYDRFTFVEVPKEVAGQVMAAMQESTIKGRTINIEPARKR
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggctacatcttacgagaagacgagctttcaggatctgggcatctccgaccgg
gtgctgcgcgccctggcggagatgggcttcgaggagccctcgccgatccaggcgcgggcg
atccccctgctcctggcggggaaggacctgatcggccaggcccagaccggcacgggcaag
acggcaaccttcggcgtgcccatcgtcgagaagatcgacccgcgggtgcgggccacgcag
gccctggtcctcaccccgacccgggagctcgccatccaggtggcggaggagatcggacgc
atcgggcggttcagccgggtgcgcgtgggccccatctacggcgggcagagcatcgagcgg
caggtgcggctcctgcgcgccggcctggaggtcgtggtgggtacgcccgggcggatcatg
gaccacatgcgccgtggcgtcctgagcctcgaccggctgcggatcctggtcctcgatgag
gccgacgagatgctggacatgggcttcatcgaggacatcgagtggatcatccagcaggcg
ccgcaggaccggcagaccatgctcttctcggccaccatgccggaggagatccgccggctg
gcgcagcggtacatgcgggacccggagttcgtgcaggtgagcccgcagcagctgacggtg
ccgcagatcgagcagttcttctacgaggtccggcaggccctcaagaccgaggccctcacc
cggatcctcgacgccgagaacgtggaacgggccatcatcttctgccgtacgaagaagggc
gtcgacgagctcacggaggccctgcaggggcggggctacctcgccgaggggatccacggc
gacatgaaccaggcccagcggaaccgggtgatggagcgtttccgcggtggtcaggtggag
ctgctggtggccacggacgtggccgcccgcggcctcgacatcgagggcgtgacgcacgtc
atcaactacgacatcccccaggaccccgagtcgtacgtgcaccgcatcggccgcacgggg
cgggccgggcggtcggggacggccatcaccctcatcacgtcccgggagttcccgcagctg
cggctgatcgagcggggcatccgccagcgcatccagcggcgcccgctcccgtccctggcc
gacatcgccgagcgccagagagaaacgctgaagtcccgggtcctgaaggccctggaggag
ggccacctgggctacttccgggaggtcgctcgggacctcctgcaggaggactacgccgcc
gaggagctcctggcggccgccctcaaggtcgcggcgggcgaccaggctccgccggcgccg
ctgcccaccgacttcggggagaccggcgccgagcccgggttcgtgcgcttcttcatcaac
atcggccgcgcccagggtgtccagccggccgacatcgtgcgcagcatcgccggccaggcg
gggatcccgggccacgtcatcgggacgatcgacatctacgaccggttcaccttcgtggag
gtgcccaaggaggtcgccggccaggtcatggcggccatgcaggagtcgacgatcaagggc
cggaccatcaacatcgagccggccaggaagcggtga
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