Caldinitratiruptor microaerophilus: caldi_16250
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Entry
caldi_16250 CDS
T08566
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
cmic
Caldinitratiruptor microaerophilus
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmic03009
]
caldi_16250 (rimO)
Enzymes [BR:
cmic01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
caldi_16250 (rimO)
Ribosome biogenesis [BR:
cmic03009
]
Prokaryotic type
ribosomal protein modification factors
caldi_16250 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
Mur_ligase_C
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
BDG60535
UniProt:
A0AA35CNG7
LinkDB
All DBs
Position
complement(1631769..1633178)
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AA seq
469 aa
AA seq
DB search
MGNALKVGFISLGCAKNLVDTESMIGLVLGEGLEVTNRRDEADVLVVNTCGFIEAAKKES
IEAILEAARAKETGRCRALVVAGCLVSRYKEELLDEIPEIDAVIGTADYPRIVEVVRRVW
EGQRVEAVSDPDAIADWNFDRVLTTPSHTAYLKIAEGCNCACSFCSIPLMRGHYRSRPVE
SVLEEAWRLAGLGVKELIVVSQDTSYYGLDRYRRLMLPELLRRLAEIPGLRWIRVHYLYP
TRVTDELIDVLATEPKVVRYLDVPLQHGSPRVLRLMNRPADPEAYLRLLARVRERVPGVT
LRSTFITGHPGETEEDFEQLLDFLRRAEIDHVGVFAYSQEEDTPSGRMSDQVPPEVREER
RRRAMTVQRAIALRLRRQRVGSVEEVLVERPLGGQPGWYVGRTQGQSPDVDGVVRLHAPD
AGLRPGDFVAAEITGVRGYDLVARLAPEAPTPGTTSRALREGRAPAPMV
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
ttgggcaacgcgctgaaggtcggcttcatctcgctgggctgcgccaagaacctggtggac
acggaatcgatgatcgggctcgtcctgggggagggcctggaggtcacgaaccgccgggac
gaggccgacgtgctcgtcgtcaacacctgcgggttcatcgaggcggccaagaaggaatcc
atcgaggcgatcctcgaggcggcccgggccaaggagacgggccggtgccgcgcgctcgtc
gtcgccggctgcctggtatctagatataaggaagaactcctcgacgagatcccggagatc
gacgcggtgatcggcaccgccgactacccgcgaatcgtggaggtcgtgcgccgggtctgg
gagggacagcgggtggaggcggtgagcgaccccgacgccatcgccgactggaacttcgac
cgggtcctcacgacgccctcgcacaccgcctacctcaagatcgccgagggctgcaactgc
gcctgcagcttctgcagcatccccctcatgcggggccactaccgcagccggcccgtcgag
tcggtcctcgaggaggcctggaggctggccgggctgggcgtgaaggagctcatcgtggtc
tcccaggacacgagctactacggcctggaccgttaccgccgcctcatgctgcccgagctc
ctgcgccgcctggcggagatccccgggctgcggtggatccgggtgcactacctctacccg
acccgggtgacggacgagctgatcgacgtgctggccaccgagcccaaggtggtgcgctac
ctggacgtacccctccagcacggcagcccccgggtgctgcggctcatgaaccggcctgcg
gacccggaggcgtaccttcgcctcctggcgcgcgtccgggagcgggtgccgggcgtcacc
ctgcggtcgaccttcatcaccggccaccccggcgagaccgaggaggacttcgagcagctg
ctcgacttcctgcgccgggcggagatcgaccacgtcggcgtgttcgcgtactcccaggag
gaggacacgccctcgggccggatgtccgaccaggtccccccggaagtgcgggaggagcgc
cggcgccgggcgatgaccgtgcagcgggcgatcgccctgcggctccggcggcagcgggtc
ggcagcgtggaggaggtgctggtggagcgcccgctcggcggccagcccggctggtacgtg
ggacgaacgcagggacagtccccggacgtggacggggtggtgcggctccatgccccggac
gcgggcctgcggcccggggacttcgtggccgccgagatcacgggggtccggggctacgac
ctcgtggcccggctggcgccagaggcgcccactccaggcacaacttcccgcgccctgcgc
gagggccgggcgcccgctcccatggtataa
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