Caldinitratiruptor microaerophilus: caldi_18130
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Entry
caldi_18130 CDS
T08566
Symbol
ylyB
Name
(GenBank) putative RNA pseudouridine synthase YlyB
KO
K06180
23S rRNA pseudouridine1911/1915/1917 synthase [EC:
5.4.99.23
]
Organism
cmic
Caldinitratiruptor microaerophilus
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmic03009
]
caldi_18130 (ylyB)
Enzymes [BR:
cmic01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase
caldi_18130 (ylyB)
Ribosome biogenesis [BR:
cmic03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
caldi_18130 (ylyB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
RelA_RIS
Motif
Other DBs
NCBI-ProteinID:
BDG60723
UniProt:
A0AA35G8R7
LinkDB
All DBs
Position
complement(1825654..1826598)
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AA seq
314 aa
AA seq
DB search
MTQVFRFRAGEADAGQRLDVFLAAQPEPGLSRARIQALIRSGRCRVGGRPARAGQRLSPG
DEVVLEVPPPEAAGLVPEDIPLDVVYRDEDVLVVNKPRGLVVHPAAGHARGTLANTVAGM
AAWEDGEDVPGDPARPGIVHRLDKDTTGLLVVALNPQAHQRLAEQVQRRALRREYLAIVH
GSPPVESGRIEAPVGRHPTDRKRMAVTPGRGREAITHFRVLERYRGFSLVQCRLETGRTH
QIRVHLAYIGHPVAGDPVYGPRRQALGLTAQALHAFRLGFVHPRTGEWLQFEVPPPEDMA
RAIEALRRGEAGEA
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcaggtgttccggttccgtgcgggggaggcggacgccgggcagcggctcgacgtg
ttcctcgccgcgcagcccgagccgggcctgtcccgggcgcggatccaggcgctgatccgg
tccggccgctgccgggtgggcggccggcccgcccgggcggggcagcgcctgtcccccggg
gacgaggtcgtcctggaggtgcccccgccggaggcggccggcctggtgccggaggacatc
ccgctggacgtggtgtaccgggatgaggacgtgctggtggtcaacaagccccgggggctc
gtggtgcacccggcggcggggcacgcgcggggcacactggccaacaccgtggccgggatg
gcggcgtgggaggacggcgaggacgtccccggcgaccccgcccgaccgggcatcgtccac
cggctcgacaaggacaccacgggcctcctcgtggtcgccttgaacccgcaggcgcaccag
cgcctggccgagcaggtccagcgccgcgccctgcgccgggagtacctggcgatcgtccac
gggagcccgcccgtggagtccggccggatcgaggcgcccgtgggccggcacccgaccgac
cgcaagcggatggcggtcacgccgggccggggccgggaggcgatcacccacttccgggtg
ctggaacggtaccggggcttcagcctggtgcagtgccggctggagaccggccggacccac
cagatccgggtgcacctggcctacatcgggcacccggtggcgggggacccggtctacggg
ccgcgccggcaggccctggggctgacggcgcaggccctgcacgcgttccggctcggcttc
gtccacccccgcaccggggaatggctccagttcgaggtccccccgccggaggacatggcc
cgggcgatcgaggccctccggcggggcgaggccggggaggcgtag
DBGET
integrated database retrieval system
