Caldinitratiruptor microaerophilus: caldi_21080
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Entry
caldi_21080 CDS
T08566
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
cmic
Caldinitratiruptor microaerophilus
Pathway
cmic03030
DNA replication
cmic03410
Base excision repair
cmic03420
Nucleotide excision repair
cmic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
caldi_21080 (polA)
03410 Base excision repair
caldi_21080 (polA)
03420 Nucleotide excision repair
caldi_21080 (polA)
03440 Homologous recombination
caldi_21080 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmic03032
]
caldi_21080 (polA)
03400 DNA repair and recombination proteins [BR:
cmic03400
]
caldi_21080 (polA)
Enzymes [BR:
cmic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
caldi_21080 (polA)
DNA replication proteins [BR:
cmic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
caldi_21080 (polA)
DNA repair and recombination proteins [BR:
cmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
caldi_21080 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
caldi_21080 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
BDG61018
UniProt:
A0AA35CMD3
LinkDB
All DBs
Position
complement(2148069..2150786)
Genome browser
AA seq
905 aa
AA seq
DB search
MPGAGKLVLIDGNSLAYRAYFSFQEFRASGGFPTGAIFGFLRMLYKVLDDEQPTHLAVAF
DVPGPTFRDEWYAAYKATRQAAPDDFKVQLGPLREVLRALRVPYLELAGYEADDLIGTLS
RIASERGIPTVIVTGDRDALQLVDDHVTVLLTRRGVTDVARMDRAAVRAAYGITPEQVVD
LKSLMGDPSDNIPGVPGVGEKTAVRLLQAFGTLEGILANIDRVPGRKLQERLREHEADAR
LSRRLATIDRQVPIEVDLDALGRQEPDYAEAQRLFKQLEFRSLLPRVTPPVDVPESSAAE
GGAGPPDAALAAAGSEAAPAGPALQIELVADAAPAARLADALPGTAGLIAPVQPVPAGGP
VGPYGRGEPQGVALAPLDGGAATAVWFEPAALPGLDAYWSRATDLAAFDVKPFYVWLLRR
GVAAAPPAFDGAVAAYLLDPGRSTYRVDDLLRQYGLGEVPDPASPGGRAAAAARLGRLRE
AMRRDLEEAGLWPLFAEVEMPLLPILARMEATGIRVDREQLEAIGRELDDRIVALQQEIW
TAAGMQFNINSTKQLGEVLFEKLGLPTVKRTKTGYSTDAEVLEELAALHDVPAKILDYRT
LVKLKGTYVDGLKELVEPDGRVHTTFNQTVAATGRLSSADPNLQNIPIREEEGRRLRKVF
VPAEGWVLFAADYSQIELRIAAHFSGDPALREAFEQGQDVHARTAAEVFGLEIDQVTKEQ
RRMAKTVNFGLLYGQSDFGLARALRIGRGEARAFIERYFERYPGVKRYMEEKVREAREKG
YVTTLLGRRRFLPDIHSRTFAVRQNAERAAINTPIQGTAADLMKLAMIAVDREVRRAGLR
ARMLLQVHDELVFEAPPEEIPRLREIAEREMTGAMRLSVPLAVETRVGPNWYDMVPADEW
LAARS
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
ttgccgggagcggggaagctcgtcctgatcgacggcaacagcctggcctaccgggcctat
ttttcgttccaggagtttcgcgcttcggggggcttcccgaccggggccatcttcggcttc
ctccggatgctgtacaaggtgctggacgacgagcagcccacgcacctggcggtggccttc
gacgttcccggccccaccttccgcgacgaatggtacgcggcctacaaggcgacccggcag
gcggctcccgacgacttcaaggtgcagctcggcccgctgcgggaggtgctgcgggcgctg
cgcgtgccctatctcgaacttgcgggctacgaggcggacgacctcatcggcaccctctcc
cggatcgcctcggagcgggggatccccacggtgatcgtcaccggcgaccgggacgccctg
cagctggtggacgaccacgtcaccgtgctgctcacgcggcggggggtcacggacgtggcc
cggatggaccgggccgccgtccgggccgcctacgggatcacccccgagcaggtggtcgac
ctcaagagcctcatgggcgacccgtcggacaacatccccggcgtgcccggggtgggggag
aagacggccgttcgtctcctccaggcgttcggcacgctcgaggggatcctggcgaacatc
gaccgggtgccgggccggaaactgcaggagcgcctgcgcgagcacgaggcggacgcccgg
ctctcccggcggctggcgacgatcgaccggcaggtgcccatcgaggtcgacctcgacgca
ctcgggcgccaggagcccgactacgccgaggcgcagcgcctgttcaagcagctggagttc
cgctcgctcctgccgcgggtgacgcctccggtggacgtgccggagtcctccgcggccgag
ggcggggccgggcccccggacgcggcgctcgcggcagccgggagcgaggcggcccccgcc
gggccagcgctgcagatcgagcttgtggcggacgcggcgcccgctgcccgcctggcggac
gcgttgccggggacggccgggctcatcgccccggtacagcccgtgcccgccggagggccc
gtcgggccgtacgggcgaggggagccgcagggggtcgccctggccccgctggacgggggc
gccgcgaccgccgtatggttcgagccggcggcgctgcccgggctggacgcgtactggtcc
cgggcgacggacctggcagcgtttgacgtcaagccgttttacgtctggctcctgcggcgg
ggcgtggcggcggccccgccggccttcgacggcgccgtggccgcctacctgctggacccg
ggccggagcacgtaccgggttgacgacctgctccggcagtacgggctcggcgaggtgccc
gaccccgcatcgccgggcgggcgggccgccgccgccgcccgcctcgggcgcctgcgggag
gcgatgcggcgggacctggaggaggccggcctctggccgctcttcgcggaggtcgagatg
cccctcctgccgatcctggcccggatggaggccacggggatccgggtggaccgggaacag
ctcgaagccatcggccgcgagctcgacgaccggatcgtggcgctgcagcaggagatctgg
acggcggcagggatgcagttcaacatcaactccacgaagcagctgggcgaggtcctgttc
gagaagctcggcctgccgaccgtcaagcggaccaagacgggctactcgaccgacgccgag
gtgctcgaggaactcgccgcgctccacgacgtgccggcgaagatcctggattaccggacg
ctcgtgaagctcaagggtacttacgtggacggcctcaaggagctggtcgagccggacggc
cgcgtccacacgacgttcaaccagacggtcgccgccaccggccggctgtcgagcgccgac
ccgaacctgcagaacatcccgatccgggaggaggagggccgccggctccgcaaggtcttc
gtcccggcggagggctgggtcctgttcgcggcggactactcgcagatcgaactgcgcatc
gccgctcacttctccggcgacccggccctgcgggaggcgttcgagcagggccaggacgtg
cacgcccgcacggcggcggaggtgttcggcctggagatcgaccaggtgacgaaggaacag
cggcgcatggcaaaaactgtaaatttcggcctgctctatggtcaaagtgacttcggcctt
gcccgggcgctgcggatcggccgcggggaggcccgggcgttcatcgagcggtacttcgaa
cggtatccgggcgtcaagcgctacatggaggaaaaggtgcgggaggccagggagaagggt
tacgtcacgacgctgctcgggcggcgccgcttcctcccggacatccactcccgcacgttc
gccgtgcggcagaatgccgagcgggcggccatcaacacgcccatccaggggaccgccgcc
gacctcatgaagctcgccatgatcgctgtcgaccgggaggtgcgccgggcggggctgcgg
gcccggatgctcctgcaggtccacgacgagctggtcttcgaggcgccgcccgaggagatc
ccccgcctgcgggagatcgccgagcgcgagatgacgggagcgatgcggctgtcggtcccc
ctggccgtggagacccgggtgggccccaactggtacgacatggtgccggccgacgagtgg
ctggccgcccgcagctag
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