Caldinitratiruptor microaerophilus: caldi_21420
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Entry
caldi_21420 CDS
T08566
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cmic
Caldinitratiruptor microaerophilus
Pathway
cmic03030
DNA replication
cmic03430
Mismatch repair
cmic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
caldi_21420
03430 Mismatch repair
caldi_21420
03440 Homologous recombination
caldi_21420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmic03032
]
caldi_21420
03400 DNA repair and recombination proteins [BR:
cmic03400
]
caldi_21420
Enzymes [BR:
cmic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
caldi_21420
DNA replication proteins [BR:
cmic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
caldi_21420
DNA repair and recombination proteins [BR:
cmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
caldi_21420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
T2SSK
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BDG61052
UniProt:
A0AA35CKU4
LinkDB
All DBs
Position
complement(2185616..2188747)
Genome browser
AA seq
1043 aa
AA seq
DB search
MPEFVHLHVHTEYSLLDSTCRVEDLARAARAAGFRSLAMTDRAVLFGAVPFVRACEAEGI
RPILGAEVPVTDSRPAARAGGAASGSQAPNSVILLAADADGYRSLSRLLSALHLGAGGPE
PAATPEVLAAHARGLLCLSGGPGGPVAAALLRQQPAEAERVAGELRDIYGPESFFLELQD
HGLAAEAQANRQLVALARRLGISLVATNDVHYLHPGEARLHDLLVAIREGRTVDDPALPR
LPNHQYHLRPGAEMEARFRELPEAVRTTAEIAERCSAALPTGQSLLPRFPLPPGEPDADA
YLRRLCEERLPLRYPSPDGTVRARLEHELGVIARMGYASYFLIVWDFIEHARRRGIPVGP
GRGSGAGSLVAYVLGITGVDPLRHGLLFERFLNPERVDMPDLDIDFCYERRGEVIDYVVQ
RYGADRVAQIITFGTLGARAAVRDVGRALGLPLPEVDRLARAIPHGTSLEEATRLPEVAR
IRERSPRLAELLGLARAVEGLPRHPSVHAAGVVIAPGPLTDYVPLYRTAEGVTVTQFDMD
QLKELGLLKMDFLGLRTLTVIHKTVEAVRRREPDFDLHAIPADDPATFALLAAGETAGVF
QLEAGWVADVLRRLRPERFGDIVASISLCRPGPMEHIPDFLAARHGTPHYRHPDLEPILR
DTYGVMIYQEQIMQVAATVAGFSLGEADLLRRAVSKKQPEAMQRYRDRFLAGARERGYSQ
ELAEELWEDILRFAGYGFNAAHAAAYAVIAYQTAYLKRHYPAEFLAALLSSVSGDEEKVR
LYVSEARRLGVHVLPPDVQTSLADFAVAPGPERSPAIRFGLAAIKNVGRGLAGRVVDARA
AGGPFRSFEDFLARVGAREAGRRSVEFLIKAGALDSLGEPRSALLQRLDDALGSAGSNPR
RTPMGQPTLFDLAGDPAGPVAVPPGLRQAPAAPARDDPAALREMEREALGFVLSEPAPGR
AAGPGAAQVLYLRVAARDPQDPALAPVLALLGRHPGPDRVRVKLDLSGRWLELAPRYRVR
TTPELVAALREVLGPDGVAVRNR
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgagttcgtccacctgcacgtacacacggagtacagcctcctcgacagcacctgc
cgcgtggaggacctcgcccgggccgcgcgggcggctggattccgctccctggcgatgacc
gaccgggccgttctcttcggcgcggttcccttcgtgcgcgcttgcgaggccgagggcatc
cgtccaatcctcggcgcggaggtgccggtgacggactcccgccctgccgcccgggcgggc
ggtgccgcttccgggtcgcaggcgccgaattccgtcatcctccttgccgcggatgcggac
ggataccgcagcctttcccggctcctctcggccctccacctcggggcgggcgggccggag
cccgctgccacccccgaggtcctcgccgcccacgccagaggcctcctgtgcctcagcggc
ggacccggcggtcccgtggccgccgcactcctgcggcagcagccggccgaggccgagcgt
gtggcgggcgagcttcgggacatctacgggccggagagtttcttcctggagctgcaagac
cacggcttggcggcggaggcgcaggccaaccggcagctcgtggccctcgctcgccggctg
gggatatccctggtggcgaccaacgacgtgcactacctgcaccccggcgaggcccgcctg
cacgacctgctggtggccatccgggagggccggacggtggacgacccggcactgccccgg
ctccccaaccaccagtaccacctgcgccccggggccgagatggaggcccgcttccgcgaa
ctgcccgaagcggtccgcaccaccgccgagatcgcggagcgctgttcggcggccctcccg
acggggcagagcctgctgccccgattcccgctgccgccgggggaaccggacgcggacgcc
tacctccgccggctctgcgaggagcggctgcccctccggtacccctcgcccgacgggacg
gttcgtgcccggctcgaacacgagctgggtgtcatcgcgcggatgggctacgccagctac
ttcctcatcgtctgggacttcatcgagcacgcgcgccgccgcgggatccccgtcgggccc
ggccggggcagcggggccggcagcctggtggcctacgtcctggggatcaccggggtcgac
cccctgcggcacggcctcctcttcgagcgcttcctcaaccccgagcgggtggacatgccc
gatctcgacatcgacttctgctacgagcgccggggcgaggtcatcgactacgtggtgcag
cggtacggcgcggaccgggtggcccagatcatcacgttcggtacgctcggggcccgggcc
gccgtgcgggacgtgggccgggcgctggggctgccgcttccggaggtcgaccgcctcgcc
cgggccatcccccacggcaccagcctggaggaggccacccgcctgcccgaggtcgcccgg
atccgggagcgctcgccccggctggccgagttgctgggcctggcccgggcggtggagggg
ctgccccggcacccctcggtccacgcggcgggggtcgtgatcgcccccggacccctcacc
gactacgtgcccctgtaccgcaccgccgagggcgtgaccgtgacccagttcgacatggac
cagctgaaggagctgggcctgctcaagatggacttcctcgggctccgcaccctgaccgtg
atccacaagacggtcgaggccgtccgccggcgcgagcccgatttcgatctccacgccatc
cctgccgacgatcccgccaccttcgcgcttctggccgccggcgagacggccggcgtcttc
cagctcgaggccggctgggtggccgacgtgctgcgccggctgcggccagagcggttcggc
gacatcgtggcgagcatctcgctgtgccggccggggccgatggagcacatccccgacttc
ctggcggcgcgccacggcaccccgcactaccgccacccggacctggagccgatcctgcgg
gacacctacggggtgatgatctaccaggagcagatcatgcaggtcgcggccacggtggcg
gggttctccctgggcgaggccgacctcctccgccgggcggtgtcgaagaagcagccggag
gccatgcagcgctatcgggaccgcttcctggccggggcgcgggagcggggttacagccag
gagctggccgaagagctctgggaggacatcctccggttcgccggctacggcttcaacgcc
gcccacgccgccgcctacgcggtgatcgcctaccagaccgcgtacctgaagcgacactac
ccggcggagtttctggcggcgctcctttccagcgtgagcggggacgaggagaaggttcga
ctctacgtgagcgaggcccggcgcctcggggtgcacgtcctgcccccggacgtgcagacg
agcctcgccgacttcgccgtggcgccggggccggaacggtcgccggccatccggttcggc
ctggcggccatcaagaacgtcggccggggcctggccggccgggtcgtcgacgcccgggcg
gccggaggccccttccgctcgttcgaggacttcctggcccgagtgggcgcccgggaggca
ggccggcggtcggtcgagttcctgatcaaggcgggcgcgctggactccctcggcgagccc
cggtccgcgctcctgcagcgcctggacgacgccctcggcagcgcggggtcgaacccgcgg
cgaacccccatgggccagcccaccctcttcgacctggccggagacccggccggaccggtg
gccgtcccgccgggcctccggcaggcgccggcggcgccggcccgggacgatcccgctgcc
ctgcgcgagatggagcgggaggcgctgggcttcgtcctcagcgagccggccccgggtcgg
gctgccggtccgggagcggcgcaggtgctctacctccgggtggccgcccgcgacccgcag
gacccggcgctggcaccggtgctggccctgctgggccggcatccgggtcccgatcgcgtt
cgggtgaaactggatctgagcgggcgctggctcgagctcgcgccgcgctaccgggtccgc
accaccccggaactcgtggcggcgctgcgggaggtcctggggccggacggggtggccgtg
cgcaaccggtag
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