Caldinitratiruptor microaerophilus: caldi_23060
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Entry
caldi_23060 CDS
T08566
Name
(GenBank) intein-containing adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
Organism
cmic
Caldinitratiruptor microaerophilus
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuc_red_lgC
LAGLIDADG_3
Intein_splicing
Ribonuc_red_lgN
Hint_2
Hom_end
Endonuc_subdom
Emfourin
Motif
Other DBs
NCBI-ProteinID:
BDG61216
UniProt:
A0AA35G6F4
LinkDB
All DBs
Position
complement(2343477..2348543)
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AA seq
1688 aa
AA seq
DB search
MRLTHIARTVMAKRYLRRKPDGTQETPDEMVRRVARVVAAVDANYGASPEDVRKTEEDFY
NLIDSQDFMPNSPTFTGAGTELGQLSACFVLPVGDSLGEIYETMKQAALIHQTGGGCVAG
DAHVYTTFCGVEQIRTLYERVRALGVPEEQRPGHRVMDVTDLGIRTFAVDPATGRFETRQ
VTHLWQWDVPAEYQYTVRCRDGTEITTSSWHPFLVFTARGIEERRADELRPGDILLTSNG
SVRAAWPFKEPLEVEGLRLDEPLAWLVGFFLGDGSLDRFRNRKTRYEALRLRLFDGRPES
IRFAAQVLAAHGVEVTPDQDGRGLWRLTTTNQDFVPRFARLSQVTPGPKEDLTLPEWVAK
SPLSVVGAFLGGLIDSDGHVSVRRRRVEFTTVCPQLARRLVSLLSALGFNPSMYPKAPGK
KGRRVEYRIHLADARRVPDLVDLVAEWVHDPLKRERLAALREQAQHNTHLRIPLPFEVLE
GLLLAAGVETRDTSIHRLPVQVAGERIWLHRAKWGHGIGEDKLRRLVRALRPLVPPTHAE
RLDQLERLAEGWTVVERVERAQEPKPFYDFTVEGYNNYLAGGGPGKFTVVHNTGFAFSRL
RPAGDVVRSSQGVASGPVSFLKVYNASTEAVKQGGTRRGANMGILRVDHPDILEFIHCKD
DLTQVTNFNISVAITDRFMEALERDEEYELVNPRNGEVVKKLRARQVWDELIQSAWATGE
PGLVFIDRINRRNPNNHVEVIEATNPCFHPDTRIATERGLERIEDLYRRAQGGWIQVATD
DRVWNEAVVVGGRTYRVPGVTMRPARVIRTGVKPTLRISFTCGLELKVTADHRILTAEGW
KEAGQLRPDDVVLVQSGPGAWAAGDEIGPELGHLLGWMTGDGWITQDGQAGLVFGEEDAH
LIPYFEDIIARHGGGVRRALRRGNGTFNLFFKRKELVDRLEAWGMKRVRAHEKRVPDAIF
TASRSTVVAFLDALFSADGTVSHTDDNHRDLRLSSASRQLLQDVQLLLLNFGIFSRIFAR
GKRGQTGFSYVTRGGEERQYTSRGYYELIVNGDDLLRFQEEIGISLSPQKGAKLRQIARK
SRKNTHFVTRVLSVEPGETVDVYDIQEPATHSLIAGGVVCHNCGEQPLPPYGSCNLGSVN
LANFVRNPYTDKADVDWKRLASVVHRATHFLDNVIDANRYPLEQIAEKSRRDRRIGLGVM
GWAEMLVQLGLPYDSEEACQMGRRVMSFIKQEALRQSMELAERRGPYPDWEGSKWHKAGL
KVRNATLTTVAPTGTISLFAARDDMPCSGGIEPKFAIVFTRNQAGALMLDVDGQFAEIAK
REGWYSDELMERIAEHGSPRGVDGVPERWQRLFATAHDITPYWHVRMQAAFQGEDDLDVA
EQPIDAACSKTINFPHDATADDVREAYELAWKLGLKGITVYRDGARQGQVLTVGKKDEKK
EPVAVGAVSAPTSVTATAQAAGATAPAVAAGALPGGAAVVEPPGSAGAAPTQAPAAKGPA
LSPRPSEATGKMFKIPTHFGNMTLDVHMREDGEPFEVIVSVGAVGSDLMADAVAIGMLIS
TLLRLRSDVPWRERMEIVIDKLKNIGGSTSSGFGPNRITSLASAVARGLQRFLAWKDSQE
AADRPAANGHAAVAPAAIEIAAGTDAPAGQRAPKGGADNVNPCPECGAFTLVWGEGCQTC
YNCGYSKC
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
gtgagactgacgcacatcgccaggaccgtgatggccaagcgctacctgcggcggaagccg
gacggcacgcaggaaacgccggacgagatggtgcgccgcgtggcgcgcgtggtcgccgcg
gtcgacgcgaattacggcgccagcccggaagacgtccggaagacggaagaggacttctac
aacctgatcgacagccaggacttcatgccgaacagccccacgttcacgggcgccgggacc
gagctgggccagctctccgcgtgcttcgtgttgcccgtcggcgattccctgggcgagatc
tacgagacgatgaagcaggccgccctcatccaccagacgggcggcggctgcgtggccggg
gacgcgcacgtgtacacgacgttctgcggggtcgagcaaatccgcacgctgtacgagcgg
gtacgggcccttggtgtcccggaggagcagcggccaggacatcgggtcatggacgtgacc
gacctgggcatccgcaccttcgcggtcgacccggccacggggcggttcgaaacgagacag
gtcacgcacttgtggcagtgggacgttccggccgagtatcagtacacggtacggtgccgc
gacggcacggagatcaccaccagcagctggcacccgttcctggtgttcacagcaaggggg
attgaagagcgccgtgcggacgagctccgtcccggggacatcctcctgacgtcgaacggc
tcggtccgagccgcctggccattcaaggagccgttggaggtagagggactccggctcgac
gagccgctggcctggctggtcggcttcttcctcggggatggcagcttggaccggttccgg
aaccggaagacccggtacgaggcgctccgcctccggctgttcgacgggcgcccggagagc
atccggttcgccgcacaggtgctggccgcgcacggcgtggaggtcacgcccgaccaggat
ggccgcggcctgtggcggctcaccacgacgaaccaggacttcgtgccgaggttcgctcgc
ctgtcgcaggtgacgcccggccccaaggaggacctcacgctgccggaatgggtggccaaa
tcgccgctctccgtggtcggggccttcctcggtggtctgatcgactccgacggtcacgtg
agcgtcaggcggcggcgggtcgagttcaccacggtgtgccctcaactggcgcgccggttg
gtctcgctcctcagcgcgctcgggttcaacccgtcgatgtatccgaaggctcccgggaag
aaaggccggcgggtcgagtatcgcattcacctggcggacgcaaggcgggtgcccgacctg
gtggacctggtggcggagtgggtgcacgacccgctcaagcgggagcggctcgccgccctg
cgggagcaggcgcagcacaacacccatctccgcatcccgctgcccttcgaggtgctggag
ggcctcctcctagcggccggggtcgagacgagagacacctcgatccacaggctacccgtc
caggtcgccggagagcgcatctggctccaccgcgcgaagtggggccacgggatcggcgag
gataaactccgccggctggtgagggcgctgcgccccctggtaccccccacccatgcagag
cggctcgaccagcttgagcggctggccgaaggttggaccgtggtggagcgcgtggagcgg
gcgcaggaaccgaagccgttctacgacttcacggtcgagggttacaacaactacctcgcg
ggcggcggcccgggcaagttcacggtcgtccacaacaccggcttcgccttctcccggctg
cgcccggccggggacgtggtccggtcgagccagggcgtggcgagcggcccggtctcgttc
ctcaaggtctacaacgccagcacggaggcggtgaagcagggcgggacccgccgcggggcc
aacatgggcatcctgcgggtcgaccaccccgacatcctcgaattcatccactgcaaggac
gacctcacgcaggtcacgaacttcaacatctccgtcgccatcaccgaccgcttcatggag
gcgctggagcgggacgaggagtatgaactcgtcaacccgcgcaacggcgaggtcgtgaag
aagcttcgggcccggcaggtctgggacgagctcatccagtccgcctgggcgaccggcgag
ccgggcctggtgttcatcgaccggatcaaccggcggaatccgaacaaccatgtagaggtc
atcgaggcaacgaacccctgcttccatcccgacacacggatcgccaccgagcgcggtctc
gaacgcatcgaggacttgtaccgccgggcgcaggggggctggattcaggttgcgactgac
gaccgcgtctggaacgaagccgtggtcgtgggaggccgcacctaccgggtgcccggcgtg
accatgcggccggcgcgggtcatccgaaccggggtcaaacccacgctacggatatcattc
acttgcggattggagctcaaggtcacagccgatcaccgcatcctgacggccgaaggatgg
aaggaagccggacaactgaggcccgacgacgtcgtcctcgtgcagtccggccccggcgcg
tgggctgccggggacgagatcgggcctgaactgggccatctcctgggctggatgacgggc
gacggctggatcacccaggacgggcaggcaggcctcgtcttcggcgaggaagacgcccac
ctgatcccgtacttcgaggacatcatcgcccgccacggcgggggtgttcgccgggcgctg
cgccgtggcaacggcaccttcaacctgttcttcaagcgcaaggagttggtcgaccggctc
gaggcgtggggcatgaagcgtgtacgcgcccatgagaagcgggtgcctgacgccatcttc
accgcgagccggtccactgtggtggccttcctggatgccctcttctccgccgacgggacg
gtttcccacaccgacgacaaccatcgcgatctccggctttcctcggcctcccggcagctg
ctccaggacgtccagctcctcctcctgaacttcgggatcttctcccggatcttcgcccgc
ggcaagcgaggtcagaccgggttctcctacgtgacccgcggcggcgaggagcgccagtac
acctcccgcggctactacgaactgatcgtaaacggcgacgacctccttcggttccaggaa
gagattggcatcagcctttcgcctcagaagggggcgaagctccggcagatcgcccgcaag
tcacgcaagaacacgcacttcgtgacccgggtgctgtccgtggagccgggggagaccgtc
gacgtctacgacatccaggagcccgcgacccacagcctgatagccggtggcgtggtttgc
cacaactgcggggagcagcctctgccgccgtacggctcgtgcaacctcggctcggtcaac
ctcgccaacttcgttcggaatccctacaccgacaaggccgacgtcgactggaagcgactg
gcgagcgtggtccaccgggcgacccacttcctggacaacgtgatcgacgcgaaccggtac
cccctggagcagatcgccgagaagtcgcggcgggaccgccggatcggcctgggggtgatg
ggctgggccgagatgctggtgcagctgggccttccctacgacagcgaagaggcgtgccag
atgggccgccgggtgatgagcttcatcaagcaggaggcgctccgccagtccatggagctg
gccgaaaggcgcggcccctatccggactgggaggggagcaagtggcacaaggccgggctg
aaggtccgcaacgccaccctgacgaccgtcgccccgacgggcacgatctcgctcttcgcc
gcccgggacgacatgccgtgctccgggggcatcgagccgaagtttgccatcgtcttcacc
cgcaaccaggccggggccctgatgctcgacgtcgacgggcagttcgccgagatcgccaag
cgcgaaggctggtactccgacgagctgatggaacgcatcgccgagcacgggtcgccgcgg
ggggtcgacggcgtccccgagcgctggcagcggctcttcgccacggcccacgacatcacg
ccctactggcacgtgcggatgcaggccgccttccagggcgaggacgacctcgatgtcgcc
gagcagccgatcgatgccgcctgctccaagaccatcaacttcccccacgacgcgacggcg
gacgacgtccgggaggcctacgagctggcctggaagctcggcctcaaggggatcacggtc
taccgcgacggcgcccgacaggggcaggtgctgacggtgggcaagaaggacgagaagaag
gaaccggtcgccgttggcgccgtctcggctccgacgagcgtgacggctacggctcaggct
gccggcgccacggcgcccgcagtggcggcgggggcgctgcccgggggcgcggccgtggtc
gagccgcccggctccgccggtgccgcacccacccaggcgccggcggcgaagggtccggcc
ctctcgccccggcccagcgaggcgacgggcaagatgttcaagatcccgacgcacttcggc
aacatgaccctcgacgtccacatgcgcgaggacggcgagcccttcgaggtcatcgtcagc
gtgggggcggtcgggtccgacctcatggccgacgccgtggccatcggcatgctcatctcc
acccttctccgcctccgttccgacgtgccgtggcgggagcggatggagatcgtcatcgac
aagctcaagaacatcggcggctcgacctcatccgggttcgggcccaaccgcatcacgtcc
ctggcgagcgccgtggcccgggggctccagcggttcctggcctggaaggactcccaggag
gcagcagacaggccggcggccaacgggcacgccgcggtggccccggcggccatcgagatc
gccgccgggaccgatgcgccggccggccaacgggcgccgaagggcggcgccgacaacgtg
aacccgtgccccgagtgcggcgccttcacgctggtgtggggcgagggctgccagacgtgc
tacaactgcggctacagcaagtgctag
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