Caldinitratiruptor microaerophilus: caldi_24580
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Entry
caldi_24580 CDS
T08566
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
cmic
Caldinitratiruptor microaerophilus
Pathway
cmic02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
caldi_24580 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmic03021
]
caldi_24580 (sigA)
Transcription machinery [BR:
cmic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
caldi_24580 (sigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF7785
HTH_20
Motif
Other DBs
NCBI-ProteinID:
BDG61368
UniProt:
A0AA35G9E3
LinkDB
All DBs
Position
complement(2500060..2501190)
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AA seq
376 aa
AA seq
DB search
MDASREAKPAGLDDLIARGKRRGSLTESEILEHFQGQELTPEQMEEVYDQLAEHNIEVVT
DPPPPAEGGPDGAEDGVVAEPEPEATGDVEADMDLSVPEGVATDDPVRMYLKEIGRVPLL
TPEEEVELAKRIEQGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV
EKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGR
EPTPEEIADEMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQEAPAPAEAAS
YMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALR
KLRHPSRSKKLKDYLD
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggacgcctccagggaggcgaaaccggccggccttgacgacctgatcgcccgcggcaag
cggcgggggtcgctcacggagtccgagatcctcgagcacttccagggtcaggagctgacg
cccgagcagatggaggaggtctacgaccagctggcggaacacaacatcgaggtcgtgacg
gaccccccgcctccagccgaaggcggccccgacggggccgaggacggggtggtggccgag
ccggagcccgaggccaccggcgacgtggaggcggacatggacctctccgtcccggagggc
gtggcgaccgacgacccggtccgcatgtacctgaaggagatcggccgggtgcccctcctc
acgcccgaggaggaggtggagctggccaagcggatcgagcagggtgacgaggaggccaag
aagcgcctcgccgaggcgaacctgcggctggtggtcagcatcgcgaagcggtacgtgggc
cggggcatgctcttcctcgacctgatccaggagggcaacctcgggctcatcaaggccgtg
gagaagttcgactaccgcaagggctacaagttcagcacgtacgccacgtggtggatccgc
caggccatcacccgggcgatcgcggaccaggcccgcacgatccgcatccccgtgcacatg
gtggagaccatcaacaagctgatccgggtccagcgccagctcgtccaggagctcgggcgc
gagccgacgcccgaggagatcgccgacgagatggacatctccgtcgagcgggtgcgggag
atcatgaagatcgcccaggagccggtgtcgctcgagaccccgatcggcgaggaggaggac
tcccacctcggagacttcatcgaggaccaggaggcgccggctccggcggaggcggcctcg
tacatgctgctgaaggagcagctcgaggaggttctggagacgctcacgccccgggaggag
aaggtcctgaggctgcgcttcggcctcgacgacgggcgcgcccgcacgctggaggaggtc
ggccaggtcttcggcgtaacccgcgagcgcatccggcagatcgaggcgaaggcgctgcgc
aagctccgccacccgagccggagcaagaagctcaaggactacctggattga
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