Caldinitratiruptor microaerophilus: caldi_33020
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Entry
caldi_33020 CDS
T08566
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cmic
Caldinitratiruptor microaerophilus
Pathway
cmic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
caldi_33020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmic03021
]
caldi_33020
03400 DNA repair and recombination proteins [BR:
cmic03400
]
caldi_33020
Enzymes [BR:
cmic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
caldi_33020
Transcription machinery [BR:
cmic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
caldi_33020
DNA repair and recombination proteins [BR:
cmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
caldi_33020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BDG62212
UniProt:
A0AA35CN65
LinkDB
All DBs
Position
3377639..3381286
Genome browser
AA seq
1215 aa
AA seq
DB search
MLDVNYFDSMRIGLASPEQIRQWSRGEVKKPETINYRTLKPEREGLFCEKIFGPTRDWEC
HCGKYKRVRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDI
SPRALEKVLYFAAYIVIDPGNTPLIEKQLLTENEYREYREKFGNAFKAGMGAEAIKTLLQ
KIDLDKLSRELRAELKSVSGQRKIRAIRRLEVVEAFRKSGNRPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLQAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKKLVQDGYAHNIKSAKRMVERVRTEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLSANNIL
NPKDGQPVITPTKDMVLGCYYLTLVKEGARGEGRVFSSPEEALFAHDSGEVELHARVKVR
FPKDWAAKWPEGTEVRGAYAYVETTIGRLIFNEILPPELRYIEAVVEKKWMGKVVAEAYR
QLGTSATAELADRLKDLGFRYATRSGATIGIDDVEVPPEKDQILRDAEAEVEQVARQYRR
GLITNEERYQRVISIWEQAKDKVTKALVQHMDQFNPVNMMMTSGARGNVSQITQLAGMRG
LMADPSGRIIEVPVKSNFREGLTVLEYFVSTHGTRKGLADTALRTADSGYLTRRLVDVAQ
DVIVREEDCGTTAGIPVFEVRDGDEIVEKVTQRIVGRCALNDIVHPMLDEFPELREQLVA
RYPESQYPYLNYNLQNGFIAAADEMITEEHAEIIDFLNDEARRRGREDLVLDQVAIRSVL
TCRTRYGVCRLCYGRDLATGRLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVEELFEARKPKGQAVIAELDGTVSVAENKGRREITITSPEGESVTYAIPYGARIK
VRDGDVVEAGDELTEGSINPHDLLRVKGLRAVQMYLLREVQKVYALQGVDINDKHIEIII
RQMLRKVRVEDPGDSELLPGGFIDVFDFEDENARVIEAGGVPAVARPVLLGITKASLATD
SFLSAASFQETTRVLTEAAIKGKRDPLLGLKENVIIGKLVPAGTGMGRYRNIRVHTYDEL
YGEAGEAPVPVAGDD
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgctggacgtcaactacttcgactcgatgcgcatcggcctcgcgtcgccggagcagatc
cggcagtggagccgtggcgaagtgaagaagcctgagaccatcaactaccgcaccctgaag
cccgaacgggagggcctgttctgcgagaagatcttcggcccgacccgcgactgggagtgc
cactgcggcaagtacaagcgggtgcggtacaaggggatcgtctgcgaccgctgcggtgtc
gaggtcacgcgtgccaaggtccggcgcgagcgcatgggccacatcgagctggcggcgccc
gtgagccacatctggtacttcaagggcatccccagccggatggggctcctgctggacatc
tcgccgcgggcgctggagaaggtcctctacttcgcggcgtacatcgtgatcgacccgggc
aacacgcccctgatcgagaagcagctgctgacggagaacgagtaccgcgagtaccgggaa
aagttcggcaacgccttcaaggccggcatgggggcggaggcgatcaagaccctcctccag
aagatcgacctggataagctgtcccgggagctgcgggccgagctgaagtccgtctccggc
cagcgcaagatccgggccatccggcggctggaggtcgtcgaggcgttccgcaagtcgggg
aaccggccggagtggatgatcctcgacgtcatcccggtgatcccgccggacctgcggccc
atggtccagctcgacggcggccggttcgccacgtcggacctgaatgacctctaccggcgg
gtcatcaaccgcaacaaccgcctgaagcggctcctggacctgcaggcgccggacatcatc
gtccgcaacgagaagcggatgctgcaggaggccgtggacgccctgatcgacaacggccgg
cgcggccggccggtgaccgggcccggcaaccggcccctgaagtcgctctcggacatgctg
aagggcaagcagggccgcttccgccagaacctcctgggcaagcgggtcgactactcgggc
cgctcggtcatcgtcgtcggcccggagctcaagctgcaccagtgcggcctgcccaaggag
atggcgctcgagctcttcaagccgtttgtcatgaagaagctcgtgcaggacgggtacgcg
cacaacatcaagtccgccaagcggatggtcgagcgggtgcgaaccgaggtctgggacgtg
ctcgaagaggtgatccgcgagcacccggtgctcctcaaccgggcgccgaccctgcaccgc
ctcggcatccaggccttcgaaccggtgctggtcgagggccgggcgatccagatccacccg
ctggtctgcacggcctacaacgccgacttcgacggcgaccagatggccgtccacgtgccg
ctgagcgccgaagcgcaggccgaggcgcgcatcctcatgctctccgccaacaacatcctg
aacccgaaggacgggcagccggtcatcacgccgaccaaggacatggtgctgggctgctac
tacctcacgctggtgaaggagggcgcccggggagagggcagggtcttctcgagcccggag
gaagccctgttcgcccacgactccggcgaggtggagctccacgcccgggtgaaggtgcgg
ttcccgaaggactgggcggcgaagtggccggagggcaccgaggtccggggcgcgtacgcc
tacgtggagaccacgatcggccggctcatcttcaacgagatcctgccgcccgagcttcgc
tacatcgaggccgtggtggagaagaagtggatgggcaaggtggtggccgaggcctaccgg
cagctcggcacctccgccaccgcggaactcgccgaccgcctgaaggacctcggcttccgc
tacgcgacgcggtcgggcgccaccatcggcatcgatgacgtcgaggtgccgccggagaag
gaccagatcctccgggacgccgaggccgaggtcgagcaggtcgcccgccagtaccgccgg
ggcctcatcaccaacgaggagcgctaccagcgggtgatctcgatctgggagcaggccaag
gacaaggtgaccaaggccctggtccagcacatggaccagttcaacccggtcaacatgatg
atgacctccggcgcccggggtaacgtgagccagatcacccagctggccggcatgcgcggc
ctcatggccgacccgtcgggccggatcatcgaggtgccggtgaagtcgaacttccgcgag
ggcctcacggtgctggagtacttcgtcagcacccacggcacccgcaagggcctggccgac
accgcgctgcgcacggccgactcgggttacctcacccgccgcctggtggacgtggcgcag
gacgtcatcgtccgggaggaggactgcggcaccaccgccggcatcccggtgttcgaggtg
cgggatggcgacgagatcgtcgagaaggtcacgcagcgcatcgtcggccgctgcgccctg
aacgacatcgtccacccgatgttggacgagttcccggaactgcgggagcagctcgtcgcc
aggtacccggagagccagtatccgtacctgaactacaacctgcagaacgggttcatcgcc
gcggccgacgagatgatcaccgaggagcacgcggagatcatcgatttcctcaacgacgag
gcgcgccgccgcggccgggaggacctggtgctcgaccaggtcgccatccgcagcgtcctc
acctgccgcacccggtacggcgtgtgccggctctgctacggccgtgacctggccaccggg
cggctggtcgacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggcgagccg
ggtacccagctcacgatgcgcacgttccacacgggcggcgtggccggcgacgacatcacg
cagggtctgccccgggtggaggagctcttcgaggcccgcaagccgaagggccaggcggtc
atcgccgagctcgacggcaccgtcagcgtcgccgagaacaagggccggcgcgagatcacg
atcacgtcgccggagggcgaatcggtgacctacgccatcccgtacggcgcccgcatcaag
gtgcgcgacggcgacgtggtggaggcgggcgacgagctgaccgagggctccatcaacccg
cacgacctgttgcgggtgaagggcctgcgggccgtgcagatgtacctcctgcgcgaggtg
cagaaggtgtacgccctgcagggcgtggacatcaacgacaagcacatcgagatcatcatc
cggcagatgctgcgcaaggtccgggtggaggaccccggggactccgaactgctgcccggc
gggttcatcgacgtcttcgacttcgaggatgagaacgcccgggtcatcgaggccggcggg
gtgcccgccgtggcccggccggtgctcctcggcatcacgaaggcgtcgctggcgacggat
tcgttcctgtccgccgcctcgttccaggagaccacccgggtcctgacggaggccgccatc
aagggcaagcgcgacccgctcctgggtctcaaggagaacgtgatcatcggcaagctggtc
ccggccggcaccggcatggggcgctaccgcaacatccgggtccacacctacgacgagctt
tacggcgaggccggcgaggcgcccgtccccgtggccggcgacgactga
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