Candidatus Mikella endobia: PMARG_ME00070
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Entry
PMARG_ME00070 CDS
T04510
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmik
Candidatus Mikella endobia
Pathway
cmik03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMARG_ME00070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmik03400
]
PMARG_ME00070 (mfd)
Enzymes [BR:
cmik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMARG_ME00070 (mfd)
DNA repair and recombination proteins [BR:
cmik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PMARG_ME00070 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
ApoB100_C
DUF7675
Motif
Other DBs
NCBI-ProteinID:
CUX95683
UniProt:
A0A143WPS2
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All DBs
Position
I:77304..79355
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AA seq
683 aa
AA seq
DB search
MNTDNIFNVNQLHEGQLIVHMEHGVGRYDGMTIIETRGIKAEYVILTYADNDKLYVPVYS
LHLISNYDGCIDNVPLHKLGSDVWKRVRKKAVDKVRDVASELLDIYAQRTIKNGFSFSYN
KKKYQLFCKQFPFELTSDQCKVINEVLSDMCKPIAMDRLICGDVGFGKTEIAMRAAFLAI
ENHKQVAVLVPTTLLAQQHFDNFIERFANFPVHIEMISRFRSTKNRNQVLDHTAQGKVNI
LIGTHILLQNKVKWHNLGLLILDEEHRFGVLHKEHIKSIYSNIDILTLTATPIPRTLNMA
MSGIRNLSIISKPPAKRLRIKTFLCEYNALLVRKAILREVQRGGQVYYLYNNVKNIEKTA
RRLANLVPEARINIGHGKLKDRDLEKVMNDFYHQRFNVLVCTTIIETGIHIANANTIIIE
QANQFGLAQLHQLRGRVGRSHHQAYAYLLTSSPKELLSNDIHKRLEAISSLEELGAGFTL
AKHDLEIRGSGELLGSNQSGQMKTIGFTLYTKLLKNAIEAIKYGSELSLEKITSITDIEL
HLPAILPEEYIPDVNTRLSFYKRLASVENYCEIEILKKELISRFGVMPNEAHYLLMITVI
RQRAQNLGIQRIEGSNKGGAINFSNNHYIDHTYIINLLKQEPKIYRFDGQNKLKFICDLS
NFRTRLQYIADLLEKFQQHTIKN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaatactgataacattttcaatgtaaatcaattgcatgaaggtcaactaatagtgcat
atggaacacggagtaggtcgctatgatgggatgactataattgaaactaggggtattaaa
gcagaatatgtgattctaacatatgctgataatgataaactttacgttccagtatattca
ttacatcttattagcaactatgatggttgtattgataatgtgccattgcataaactaggt
agcgatgtttggaaacgagtacgaaaaaaagcagttgataaagtacgagatgtagcatca
gagcttcttgatatttatgctcaacgtactattaaaaatggtttttctttttcttataat
aaaaaaaaatatcaattattctgcaaacaatttccatttgaacttactagtgatcaatgt
aaagttattaatgaagttttgagtgatatgtgtaaacctattgccatggatcgtttaatt
tgtggtgatgttggctttggtaaaaccgagatagcaatgcgcgctgcatttttagccatt
gaaaatcacaaacaagttgctgtattagtacctactacgctgctagcacaacaacatttt
gacaattttatagaaagatttgcaaattttccagtacatattgaaatgatttctcgtttt
cgcagcaccaaaaatagaaatcaagtattagatcatacagctcaaggtaaagtaaatatt
ttaattggtacccatatactactacaaaataaagtaaaatggcataatttaggattactc
attcttgatgaagaacatcgatttggagtacttcataaagagcacataaaatcaatttat
tctaatattgatattttaactttaacagctactcctattcctcgcacattaaatatggct
atgagcggcatacgcaatttatctattatatctaaacctccagcaaagagattaaggatt
aaaacttttttatgtgaatataatgcgctattagtacgtaaagctattctacgagaagtg
cagcgtggaggacaagtttattatctatataataatgtaaaaaatattgaaaaaactgct
agaagattagcaaatttggttccagaagcacgtattaatattggtcatggcaaacttaaa
gatcgagatttagaaaaagtgatgaatgatttttatcatcagcgttttaatgtactagta
tgtactactattatagaaacaggtattcatatagctaacgctaatacaattattatagaa
caagcgaatcaattcggattagcacaacttcatcaattgcgtggccgtgtgggtcgttcg
catcatcaagcatacgcttatttgttaacctcgtcacctaaagaactactaagcaatgat
atacataagcgtcttgaagcaatatcttcactagaagaattaggggctggatttacgtta
gcaaagcatgatttagaaattagaggttccggagaactattaggatcaaatcaaagtgga
caaatgaaaactataggtttcactttatatactaagcttttaaaaaatgctatagaagct
attaagtatggaagtgaactttctcttgaaaagattacttctattaccgatattgagtta
catcttccagctatcttaccagaagagtatattcctgatgttaatactcgtttatctttc
tataaacgtcttgctagtgttgaaaattattgtgaaatagaaattttaaaaaaagaactt
attagccgttttggtgtcatgcctaatgaagcacattatttactaatgataacagttatt
agacaacgtgctcaaaatttaggtatacaacgtattgagggtagtaataaaggaggagct
ataaattttagtaataatcattatattgatcatacctatattattaaccttctgaaacaa
gaacctaaaatttatcgtttcgatggtcaaaataagttaaaatttatatgtgatttgtct
aactttagaacaagattacaatatatagctgatctattagaaaaatttcaacagcataca
ataaagaattaa
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