Corynebacterium minutissimum: NCTC10288_01514
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Entry
NCTC10288_01514 CDS
T05574
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmin
Corynebacterium minutissimum
Pathway
cmin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10288_01514 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmin03019
]
NCTC10288_01514 (deaD)
03009 Ribosome biogenesis [BR:
cmin03009
]
NCTC10288_01514 (deaD)
Enzymes [BR:
cmin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10288_01514 (deaD)
Messenger RNA biogenesis [BR:
cmin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10288_01514 (deaD)
Ribosome biogenesis [BR:
cmin03009
]
Prokaryotic type
rRNA helicases
NCTC10288_01514 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
PIN_9
UvrA_inter
adh_short
AAA_22
Cj1289-like_C
Motif
Other DBs
NCBI-ProteinID:
SQI00206
UniProt:
A0A2X4RD88
LinkDB
All DBs
Position
1:complement(1622218..1624194)
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AA seq
658 aa
AA seq
DB search
MSITDNATGGVNEPEEFNKSESQENSQGGEAQDASQASSQDTGAANNPEDTGAEETSAND
NSQGFAHLGLPDDVQEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALP
VLSQIDTDARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLR
RGAQVIVGTPGRVIDHLEKGSLDISQLRLLVLDEADEMLNMGFQEDVERILEDTPEDKQV
ALFSATMPNSIRRLSKQYLNNPAEVTVKSERRTNDNITQRFLLTPHRHKMDAFTRILEVI
DYDAIIVFCRTKHETEEVADNLKDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATD
VAARGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERV
TNARLEEMDLPTADEVNAKRKEKFFASIGASQEDKQFEFFRDMVREYSAAENVAMDDIAA
SIAVQLQGGTEFLLKERPMTKKDRRERERFDRDDRGRDRGRDRDRGGRGRERDRGPRRPD
GDFETYRLDVGKRQNVRPGAIVGALANEGGLTSKDFGRITIAVGHTLVDLPKNLDPAVLD
RLKDTRISGQLIKIQKDTGRPPRRNFDDDRGGRGGRGGRGGYRDRDRGGRGGRGGWRD
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcgtcaacgagccggaagaattcaataagtcg
gaatctcaggaaaactcgcaaggtggcgaagcgcaggacgcttcgcaggcttctagccag
gataccggggctgcgaataaccctgaggacaccggcgctgaagaaacttcagccaacgac
aactcccagggttttgcgcacctcggtctgcctgatgacgttcaggaagccgtagctaag
gtgggctttaccaagccatccccaattcaggaagaaaccatcccgatcctcatggagggc
cgcgacgtcgtcggcctcgcccagacgggtacaggtaagaccgcagccttcgcactgccg
gttctctcccagatcgatactgatgcccgccatccgcaggcactcgttctcgcgcccacg
cgcgagctggcccttcaggtcgcggactcattccagtccttcgccgaccacctgggccgc
atcgaggtcctgcctatctatggcggccaggcctacggcattcagctctctggtctgcgc
cgaggcgcccaggtcatcgtgggtactccaggtcgcgtgatcgaccacttggagaagggc
tccctggacatctcccagctgcgcctccttgtcctcgatgaggcggacgagatgctcaac
atgggcttccaggaagacgtcgagcgcattcttgaggacactccggaggacaagcaggta
gcgctgttctcggcgaccatgccgaactccattcgccgcctgtccaagcagtacctcaac
aacccggcagaggttacggtcaagtcggagcgccgcacgaatgacaacattacgcagcgc
ttcctgcttaccccgcaccgccacaagatggatgcctttacccgcattcttgaggtcatt
gactacgacgccatcatcgtcttctgtcgcaccaagcacgagactgaagaggttgcggac
aacctcaaggatgctggctataacgctgctgccatcaatggcgacattgcccagcagcag
cgtgagcgcaccgtggaccagctcaaggacggccgcctagacatcctcgtggctactgac
gtggctgcacgtggtcttgacgtcgaccgcattacccacgtggtcaactacgacatcccg
aacgacactgagtcttatgtgcaccgcatcggccgcaccggccgtgctggccgtactggt
gaggccatcctgtttgtcactccacgtgagcgccgtatgctgcgctccattgagcgcgtg
accaacgctcgcttggaagagatggacctgccgactgccgacgaggtcaacgcgaagcgc
aaggagaagtttttcgcctctatcggtgcttcgcaggaggacaagcagttcgagttcttc
cgcgacatggtgcgcgagtactccgctgcggaaaacgtggccatggatgacatcgcggct
tccatcgctgtgcagctacagggcgggacggagttcctgctcaaggagcgcccaatgacc
aagaaggatcgtcgcgagcgcgaacgcttcgaccgcgatgaccgcgggcgtgaccgcggc
cgtgaccgtgaccgcggtggccgtggacgagagcgtgaccgaggcccgcgccgccccgac
ggcgactttgaaacctaccgtctggacgtgggcaagcgtcagaacgtgcgcccaggcgcc
atcgttggtgcgctggctaacgaaggtggtttgacctccaaggatttcggccgaatcacc
attgcggtgggccataccctggtggatttgccgaagaatctggacccggctgttctggac
cgtctcaaggacacccgcatttccggccagctgatcaagatccagaaggataccggccgc
ccgccgcgccgtaacttcgatgatgatcgtggcggccgcggtggacgtggcggccgtggt
ggttatcgcgaccgcgaccgcggtggacgtggcggccgcggaggctggcgcgactaa
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