Catenibacterium mitsuokai: NQ499_02200
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Entry
NQ499_02200 CDS
T08440
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cmit
Catenibacterium mitsuokai
Brite
KEGG Orthology (KO) [BR:
cmit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmit03016
]
NQ499_02200
Enzymes [BR:
cmit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NQ499_02200
Transfer RNA biogenesis [BR:
cmit03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NQ499_02200
Prokaryotic type
tRNA splicing ligases
NQ499_02200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
S1-P1_nuclease
Motif
Other DBs
NCBI-ProteinID:
UWO53668
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All DBs
Position
436350..437570
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AA seq
406 aa
AA seq
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MIEIRGEKNNAICFASQIDEKALEQIKRMCDYDLTLGSQIRIMPDVHAGKGCTIGTTMTI
KDKVCPNIVGVDIGCGMYTVKLLNKEIDFKKVDEVCSWIPSGMNVWDSPIESFDLTKLNC
YSSLKKLSRLEKSLGTLGGGNHFIEIEQSKSGDYYLVIHSGSRNLGKQVAEIYQRRAINL
HRGWDEYILRRNEVIKEYKELGKSQEINQVLEKLKEGYGTLDIPEDLCWLYGDALNDYLH
DIEICQKYAMRNRELIANMIMDKTSLREIDSFHTIHNYIDSNEMILRKGAIRAVKGEKVL
IPMNMKDGSIIGIGKGNREWNYSAPHGAGRILSRKQAKEMLDIKEYKKSMEEIYTTSISL
DTLDEAPQAYKSVEYILDVVGETVDVIEVLKPVYNYKEHGNEKRNY
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaataagaggagagaaaaataatgcgatatgttttgcatcacagatagatgaa
aaagctttagaacagattaaaagaatgtgtgattatgatcttacgttaggaagtcagatt
cgtatcatgccggatgtacatgcgggaaaaggttgtacaattggtacgacaatgactatt
aaggataaggtatgtcctaatattgtaggtgtagatataggctgtgggatgtatacagtg
aaattattaaataaagaaattgattttaagaaggttgatgaagtatgttcatggattcct
tcagggatgaatgtatgggattcacctatagaatcatttgatttaacaaagctaaactgt
tattcatctcttaagaaattatctcgtctagaaaagtctttaggaacactaggtggaggg
aatcattttatagagattgaacagtctaaatcaggtgattattatttggttattcattca
ggtagtcgtaatcttggaaaacaagtggcagaaatatatcaaagacgtgccatcaatcta
catagaggctgggatgaatatatattaagacgcaatgaggttattaaagagtataaagaa
cttggtaaaagtcaggaaatcaatcaagtattagaaaaacttaaggaaggttatggaact
ttagatattccagaagacttatgctggttatatggtgatgcactcaatgattatcttcat
gatatagagatatgtcagaagtatgcgatgagaaatagagaattaatagctaatatgatt
atggataaaacatcccttagagaaatcgactcttttcataccattcataactacatagat
agcaatgagatgatattaagaaaaggggctatacgagcagtaaaaggtgagaaggttctt
attcctatgaatatgaaggatggatctattataggtataggtaaaggaaatagggagtgg
aactattcagcacctcatggtgcgggaagaatattatcacgtaagcaagcaaaagaaatg
ttggatatcaaggaatataagaagtcaatggaagaaatctatacaacttctatttctcta
gatacattggatgaagcaccacaggcatataaatcagtggaatatatactagatgttgtt
ggagaaacagtagatgtcatagaggtgttaaagcctgtatataactataaggagcatgga
aatgagaaaagaaattattaa
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