Christensenella minuta: B1H56_05765
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Entry
B1H56_05765 CDS
T05665
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cmiu
Christensenella minuta
Pathway
cmiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1H56_05765 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmiu03019
]
B1H56_05765 (rnr)
03016 Transfer RNA biogenesis [BR:
cmiu03016
]
B1H56_05765 (rnr)
Enzymes [BR:
cmiu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
B1H56_05765 (rnr)
Messenger RNA biogenesis [BR:
cmiu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1H56_05765 (rnr)
Transfer RNA biogenesis [BR:
cmiu03016
]
Prokaryotic type
tRNA degradation factors
B1H56_05765 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
RNase_II_C_S1
Rho_RNA_bind
Rrf2
HTH_Cmi2_C
WHD_DprA
Motif
Other DBs
NCBI-ProteinID:
AYH40020
UniProt:
A0A136Q3T0
LinkDB
All DBs
Position
complement(1209559..1211646)
Genome browser
AA seq
695 aa
AA seq
DB search
MEKTEQVLQKIGDRIYIGIDELAGAVDMPKEALEGVLSELEREYLVKRTKGGKYALASTM
GLFRGTLDCKQGGFAFLRTPEDMEDIFISPSHKGGAFNGEDVLVRLSKRQQGGKHLEGKV
VKVFSLLPVETVGTVQAKNGTVFVVSDSPGMDDIYIPKKRTRGAKNGQKVVVNVTQRAHQ
GKSPEGEIMEILGRTGEAGVDILAYARRFGLVSRFPDACKRQAQALAQEKMEFEGRLDLR
GQTVFTIDGADAKDLDDAVSLRMLENGNYELGVHIADVSYYVREGSPLDKEALHRGTSAY
MVDRVVPMLPQELSNGLCSLNAGEDKLTLSCIMEIDAQGNVTAQKMENTVIRSAHRLTYG
GVNRLLEGDAEEREKYTDIADTLMEMNRLAKILRARRFEKGSIDFNIDEPEIILDRKGVP
VDVTVRKRGDAEKLIEEFMLRANITVAEQYYYMELPFLYRIHEHPDADRMKELAIFLGNF
GIQLKGFQNVHPHAIQEVLEKVAGTTEETIVNTVTLRALKKARYATEPISHFGLAADQYC
HFTSPIRRYPDLQVHRIIKALLGGRMDEGYLRHLEKVLPEVAAQSSARERNAIEAERAVQ
DLKMTEYMSKHIGETFPAVVSGVTKFGIFAELDNTIEGMIPLAQLDDDYYVYYEKEYCVI
GEHTKKRITLGDKVKVKVVAADIALAKIEFTFADN
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
ttggagaaaacagaacaggttctgcaaaagatcggagacaggatttatatcggcattgac
gaacttgctggagcggtggatatgcccaaagaggcgcttgagggtgttctcagcgaactg
gaacgggaataccttgtgaaacggaccaagggcgggaaatacgcgctggcatccacgatg
gggctgttccggggaacgcttgactgtaaacagggcggttttgcctttttgcgtacgccg
gaggatatggaggacatctttatctcaccttcacataaaggcggcgcttttaacggagaa
gacgttctcgtcaggctgtctaaacggcagcagggcggaaagcacctggaaggaaaagtc
gtgaaggtcttctcgctgcttccggtagaaacggtagggacggtacaggccaaaaacgga
acggtattcgttgtgagcgattcgccgggcatggatgatatctatattcccaagaaacgg
acgcgcggagcaaaaaacggacagaaggtcgtcgtgaatgtcacacagcgcgcccatcag
ggaaagagcccggaaggagaaatcatggagattctcgggcggacgggagaagcgggcgtg
gatattcttgcctacgcgcggcgttttggtttggtttccaggttcccggatgcgtgcaaa
aggcaggcacaggccctggcacaggaaaaaatggagtttgaggggcggcttgacctgcgc
gggcagacggtgtttacgatcgatggcgcggacgcaaaggaccttgatgacgcggtatcg
ctccgaatgctggaaaacggcaactatgagcttggtgttcatattgcggacgtgagctat
tatgtacgcgagggatcgccgcttgacaaagaggcgctccacaggggaacgagcgcttac
atggtggaccgggtggtgccgatgcttccccaggagctttcaaacggcctctgttcgctg
aacgcgggagaagacaagctgacgctttcatgcatcatggaaattgatgcccaggggaac
gtaacagctcagaaaatggaaaacacggtgatccggtctgcccataggctgacttacggc
ggggtaaaccgcctgctggaaggcgatgcggaggagcgtgaaaaatatacggacattgcc
gatacgcttatggagatgaaccggcttgcaaagatactgcgggcgcggcgctttgagaag
ggcagtatcgatttcaatatcgacgaaccggaaatcatactggaccggaagggcgttccc
gtagacgttaccgtcagaaaacggggcgacgcagagaagctgatcgaagaattcatgctt
cgcgccaatatcacggtagcggaacagtattattatatggaattgccgttcctgtatcgg
attcatgagcatccggatgcagaccgtatgaaggaattggcgatcttcctggggaatttt
ggaatacagctgaagggcttccagaacgtccatccgcatgcgatccaggaagtgctcgaa
aaggtggcgggaacgacggaggagacgatcgttaatacggttacgctgcgcgcgctgaaa
aaagcgcgctacgcgacggaaccgatctctcatttcggcctcgcggcagaccaatattgc
cactttacttcgccgatccggcgttatccagacctacaggtccataggatcatcaaggcg
ctgcttggggggcgtatggatgaaggatatctgcggcatctggagaaagtgctgccggaa
gtggcggcacagtcgagcgcgcgggagcggaatgcgatcgaagcggagcgggcggtgcag
gacctcaaaatgacggagtatatgtcgaagcatattggggaaaccttcccggcagtggta
tcgggcgtaacgaagtttggcatctttgcggaactggataacacgattgaaggaatgatt
ccgttggcacagcttgacgacgattactacgtgtattacgagaaggaatattgcgtgatc
ggcgagcatacgaaaaaacgaatcacccttggggacaaggtgaaggtgaaagtggtggca
gcggatatcgctcttgcaaaaattgaatttacctttgcggataattaa
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