Cronobacter malonaticus LMG 23826: AFK66_001820
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Entry
AFK66_001820 CDS
T04062
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cmj
Cronobacter malonaticus LMG 23826
Pathway
cmj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFK66_001820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmj03021
]
AFK66_001820
03400 DNA repair and recombination proteins [BR:
cmj03400
]
AFK66_001820
Enzymes [BR:
cmj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFK66_001820
Transcription machinery [BR:
cmj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFK66_001820
DNA repair and recombination proteins [BR:
cmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFK66_001820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ALX77018
LinkDB
All DBs
Position
234554..235543
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVVLTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtgagt
tcgacgcacgccaaggtgacccttgagcctttagagcgtggctttggccatactctgggt
aacgcactgcgccgtattctgctttcatcgatgccgggttgcgcggtgaccgaggttgag
attgatggtgtactgcacgagtacagcaccaaagaaggcgttcaggaagatatcctggaa
atcctgctcaacctgaaagggctggcggtgagagttcagggtaaagatgaagtcgtactt
actctgaataaatctggcattggccctgtaaccgcagccgacatcacccatgatggtgat
gtcgaaatcgtcaagccgcagcatgtgatctgccacctgaccgatgaaaacgcatctatt
agcatgcgtatcaaagttcagcgcggccgtggttatgtgccggcgtctgcccgaattcat
tcggaagaagatgagcgcccaatcggccgtctgctggtcgacgcttgctacagccctgta
gaacgtattgcctacaatgttgaagcagcgcgtgtagaacagcgtaccgacctggacaag
ctggtcatcgaaatggaaaccaacggcacaatcgatcctgaagaggcgattcgtcgtgcg
gcgaccattctggcagaacaacttgaagctttcgttgacttacgtgatgtacgtcagccg
gaagttaaagaagagaaaccagaattcgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgccttaaggcagaagctatccactatatcggtgat
ctggtacagcgtaccgaggttgagctgctcaaaacgcctaaccttggtaaaaaatctctt
actgagattaaagacgtgctggcctcccgtggtctgtctctgggcatgcgcctggaaaac
tggccaccggcaagcattgctgacgagtaa
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