Cronobacter malonaticus LMG 23826: AFK66_008890
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Entry
AFK66_008890 CDS
T04062
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cmj
Cronobacter malonaticus LMG 23826
Brite
KEGG Orthology (KO) [BR:
cmj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmj03019
]
AFK66_008890
Enzymes [BR:
cmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AFK66_008890
Messenger RNA biogenesis [BR:
cmj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AFK66_008890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
T2SSE
nSTAND3
ResIII
AAA_16
PhoH
NTPase_1
HALZ
SLFN-g3_helicase
MCM
Motif
Other DBs
NCBI-ProteinID:
ALX78560
LinkDB
All DBs
Position
1913303..1917208
Genome browser
AA seq
1301 aa
AA seq
DB search
MMEKQNITLPALMAHLDSLMLRDKSRFARRLHGAKKIKNTESQQALFEQLSQEMSEAAGK
VLLREAARPAITYPENLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVEELGREGPGDILIFMSGE
REIRDTADGLMKLNLPHTEVLPLYARLSNSEQNRVFQPHAGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDAQ
ASVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPLDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAGYREVHTALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWIEPVAQHLIKRSYSEPHWERAQGAVMASE
KVTLYGLPIVAARSVNYSQIDPVLSRELFIRHALVEGDWQTRHAFFRENQKLRAEVEELE
HKSRRRDILVDDDTLFEFYDQRISVDAISARHFDSWWKKASRETPDLLNFEKSMLIKEGA
EKVSKLDYPNFWHQGNLKLRLSYQFEPGGDADGVTVHIPLPLLNQVEDAGFEWQVPGMRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTIDREAW
QAEQVPDHLKMTFRVVDDKGRKLREGKDLHALKEGLKEKVQETLSAVADDGIEQSGLHIW
SFGTLPERYEQKRGGYQVKAFPALVDEKESVGIRLFDNPQEQQHAMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIAENGGPVWSETGFAQLHDK
VRAQLNDTVVDIAKQVEQILTAVFSINKRLKGRVDMTMALGLSDIKAQMSGLVYRGFVTG
NGYKRLGDTLRYLNAIEKRLEKMAVDPHRDRAQMLKVEAVQQAWQQWLNKLPPARRDDDD
VQEIRWMIEELRVSYFAQQLGTPYPVSDKRVLQAMEQVSGA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaaaacaaaatattactctccctgccctgatggcacatctcgactcgctgatg
ctgcgcgataaaagccgcttcgcccgtcgcctccacggggctaaaaagattaaaaatact
gaatctcagcaggcgcttttcgaacagctctctcaggagatgagcgaggcggcagggaaa
gtcctgctgcgcgaagcggcgcgcccggccattacgtacccggaaaacctgccggtcagc
cagaagaaacaggatattctcaatgccgtgcgcgaccaccaggtggtgatcgtggcgggg
gagaccggctccgggaaaaccacccagttgccgaaaatctgtatggaactcgggcgcggc
gtgaaagggcttatcggccacacccagccgcgccgtctcgcggcgcgtaccgtggcgaac
cgcatcgccgaagagctgcaaaccgagccgggcggctgtgtcggttataaagtccgcttt
agcgatcacgtcagcgacaacaccatggttaagctgatgaccgacggtattctgctggcg
gagatccagcaggaccgtctgctgatgcagtacgacaccatcatcatcgatgaggcgcat
gagcgcagcctgaacatcgattttctgctgggttacctgcgcgaactcctgccaaagcgc
ccggatctgaaagtcattattacgtcggcgaccatcgatcccgagcgtttctcgcgccac
tttaataacgcgccgattattgaagtctctggccgtacgtatccggttgaggtgcgctat
cgcccgattgtggaagaagcagacgacaccgagcgcgaccagctacaggcgattttcgat
gccgtagaagagcttggccgcgaagggccgggcgatatcctgatctttatgagcggcgag
cgcgaaatccgcgacaccgccgacgggctgatgaaactcaacctgccgcacaccgaggtg
ttgccgctctatgcgcggctctccaacagcgaacagaaccgcgtcttccagccgcatgcc
gggcgacgcattgtgctggcgaccaacgtcgccgaaacctcgctgaccgtgccgggcatt
aaatatgtgatagatccggggacggcgcgcatcagccgttacagctaccgcaccaaagtg
cagcgtctgccgattgagccggtgtctcaggcgtccgccaaccagcgtaaaggccgctgc
gggcgcgtctcggaaggcatctgtattcgtctctattcggaagatgatttcctctcgcgc
ccggaatttaccgacccggagatcctgcgcaccaacctggcgtccgtcattctgcaaatg
acggcgctggggcttggcgatatcgcggcgttcccgtttgtcgaagcgccggataagcgc
aacattcaggatggcgtgcgtctgctggaagagctgggcgctatcaccaccgacgcgcag
gcgtcagtgtataaactgacgccgctgggccgtcagctttcgcaactgccggtggacccg
cgtctcgcgcgcatggtgctggaggcgcaaaagcatggctgcgtgcgcgaggcgatgatc
atcacctcggcgctgtcgattcaggacccgcgcgagcggccgctcgataaacagcaggcg
tcggatgaaaaacaccgccgcttccatgataaagagtccgattttctggctttcgtgaac
ctgtggaattacctcggcgagcagcagaaagcgctgtcgtccaatcagttccgccgtctg
tgccgtaccgattaccttaattacctgcgggtgcgcgaatggcaggatatctacacccag
ctgcgccaggtggtgaaagagctgggcattccggtaaacagcgaaccggcgggctaccgc
gaggtgcacacggcgctgttgaccggcctgctgtcgcacatcggcatgaaagacgccgat
aaacaggagtacaccggcgcgcgcaatgcccgtttctccattttccccggctccgggctg
tttaaaaagccgccgaagtgggtgatggtggcggagctggtggaaaccagccgcctgtgg
ggccgcattgcggcgcgtatcgatccggagtggatcgaaccggtggcgcagcacctgatt
aagcgctcatacagcgaaccgcactgggagcgcgcgcagggtgccgtgatggcgagcgag
aaagtcacgctctacggcctgccgatcgtggccgcgcgcagcgtcaactacagccagatc
gatccggtgctttcgcgagagcttttcatccgccacgcgctggtggaaggcgactggcag
acgcgccacgcctttttccgcgagaaccagaaactgcgcgccgaagtggaggagctggag
cataaatcgcgtcgccgcgacattctggtggacgacgacacgctgtttgagttttacgat
cagcgcatcagtgttgatgcgatttccgcgcgccacttcgacagctggtggaaaaaggcg
agccgtgaaacgccggatctgctcaacttcgaaaagagcatgttgattaaagagggcgcg
gagaaggtcagcaagctcgattacccgaacttctggcatcagggcaacctgaagctgcgc
ctgtcctatcagtttgagccaggcggcgacgccgacggcgtgacggtccatattccgctg
ccgctgttaaaccaggtggaagacgcgggcttcgaatggcaggtgccgggaatgcgccgc
gaactcatcatcgcgctgatcaaatcgctgccaaaacccgtgcgccgcaatttcgttccg
gcgcccaattacgccgaggcgtttttaggccgcgttacgccgctggagctgccgctgctg
gacgcgctggagcgcgaactgcgccgcatgaccggcgtgacgattgaccgtgaggcgtgg
caggccgaacaggtgcccgatcatcttaaaatgactttccgggtggtggatgacaagggc
cgcaagctgcgcgagggcaaagatctccacgcgctgaaagagggtctgaaagagaaagtg
caggagacgctttcggcggtggcggatgacggcattgagcagagcgggctgcatatctgg
agcttcggcacgctgcctgagcgctatgagcagaagcgcggcggctaccaggtgaaagcg
ttcccggcgctggtggatgagaaagagagcgtcggcatccggctgttcgataacccgcag
gagcagcagcacgccatgtggcgcggcctgcgccgtctgctgctgctgaacattccgtcg
ccgattaaatatctgcacgagaaactgccgaacaaagccaagctggggctctatttcaac
ccgtacggcaaggtgctggatctgattgacgactgcatctcctgcggcgtcgataagctt
atcgccgagaacggcgggccggtatggagcgaaacgggctttgcgcagcttcacgataaa
gtgcgcgcgcagctgaacgataccgtggtggatatcgcaaaacaggttgaacagatcctg
acggcggtctttagcatcaataaacgcctgaaagggcgcgtggatatgacgatggcgctc
ggtctttctgatatcaaagcgcagatgagcgggctggtgtaccgcgggtttgtcaccggc
aacggttataagcgcctcggcgatacgctccgttatcttaatgccattgaaaaacggctt
gagaagatggccgttgacccgcaccgcgaccgcgcacagatgctcaaagtggaagccgta
cagcaggcgtggcagcagtggcttaacaagctgccgcccgcgcggcgcgatgacgacgac
gtgcaggagatccgctggatgatcgaggagctgcgcgtgagttatttcgcccagcagctt
ggcacgccatacccggtatccgacaagcgcgtgttgcaggcgatggagcaggtgagcggg
gcgtaa
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