Cronobacter malonaticus LMG 23826: AFK66_013230
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Entry
AFK66_013230 CDS
T04062
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cmj
Cronobacter malonaticus LMG 23826
Pathway
cmj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFK66_013230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmj03019
]
AFK66_013230
Enzymes [BR:
cmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AFK66_013230
Messenger RNA biogenesis [BR:
cmj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFK66_013230
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ALX79289
LinkDB
All DBs
Position
complement(2737057..2738481)
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AA seq
474 aa
AA seq
DB search
MSFDSLGLSPEILRAISEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLL
QRLTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMM
KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPK
RQNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLI
GDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKREIPRMAIPGYEPDPSIPAEPIVNGRQGRGGRGGQGGGGRGQGQPRRQNSEGNRS
SGERSRPSGERGRRPDGEGNRPSGERSRRPAGEGNRPAGSKPRTRRAPRKPSGE
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcactgggcttaagccctgagatcctgcgcgccatttccgagcagggt
tacaacgaaccgactccgatccagcgccaggccattccggtggtgctttcaggcaaagat
ttgatggccagcgcccagaccggcaccggcaaaaccgcaggctttacgctgccgttgctg
caacgcctgacggcgaaccagccgcacccgaaaggccgccgcccggtgcgcgcgctgatc
ctgaccccgacgcgtgaactcgcagcccaggtgggcgagaacgtgcgcgaatacagcaaa
tatctcgacatccgctcgctggtcgtgtttggcggcgtgagcatcaacccgcagatgatg
aaactgcgcggcggcgtggatgtgcttatcgcaacgccgggccgtctgctcgatctcgaa
caccagaacgccgtgaagcttgaccaggtggaagtgctggtgctggatgaagccgaccgt
atgctggacatgggctttattcacgatatccgccgcgtgctggcgaagctgccgccgaag
cgtcagaacctgctgttctccgcgaccttctccgacgacattaaatcgctcgcggaaaaa
ctgctgcataacccggaagaagtggaagtggcgcgccgcaacaccgcctctgagcaggtg
acgcagcatgtgcatttcgtggataaaaaacgcaagcgggagctgctttcttatctgatt
ggcgacggcaattggcagcaggtgctggtgtttacccgcaccaaacacggtgctaaccat
ctggcggaacagctgaataaagatggcattaccgccgcggctatccacggtaacaagagc
cagggcgcccgtacccgcgcgctggcggatttcaaaaccggcggtattcgcgtactggtg
gcaacagacatcgccgcgcgcggtctggatatcgaagagctgccgcacgtggtgaactat
gagctgccgaacgtgccggaagattatgttcaccgtatcggccgtaccgggcgcgccgcc
gcgaccggcgaagcgctgtcgctggtgtgtgtcgatgagcacaaactgctgcgcgatatc
gaacgcctgctgaagcgcgaaatcccgcgcatggctattccgggctacgagccggatccg
tctatcccggcggagcctatcgtgaatggtcgccagggccgcggcggacgtggtggtcag
ggcggcggcggtcgtggtcagggccagccgcgtcgtcagaacagcgaaggcaaccgttca
tccggcgaacgcagccgtccgtccggtgagcgcggtcgtcgtccggatggcgaaggtaat
cgtccgtccggtgagcgttcacgtcgcccggcaggcgagggcaaccgtccggcaggtagc
aaaccgcgcacccgtcgcgcgccgcgtaaaccgtccggggaataa
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