Cronobacter malonaticus LMG 23826: AFK66_013320
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Entry
AFK66_013320 CDS
T04062
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
cmj
Cronobacter malonaticus LMG 23826
Pathway
cmj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFK66_013320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmj03400
]
AFK66_013320
DNA repair and recombination proteins [BR:
cmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AFK66_013320
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AFK66_013320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SBDS_domain_II
UB2H
Kinesin
IF2_N
Microtub_bd
DUF8810
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
ALX79306
LinkDB
All DBs
Position
complement(2753421..2755442)
Genome browser
AA seq
673 aa
AA seq
DB search
MSKPFKLNSAFKPSGDQPEAIRRIKEGLEDGLAHQTLLGVTGSGKTFTMANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLTELQ
YTRNDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGTVDSIIQR
FTVYPKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQTVYVSATPGNYELEKSGGEIIDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNKKVVDILALG
ENIAKTKPKGRGKGRTVADAEAAELALTPKALQQKIHQLEAQMVQHAQNLEFEEAAQLRD
KLHQLRELFIAAS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaccgttcaaactcaattccgctttcaaaccttccggcgaccagcccgaggct
atccgccgcatcaaggaagggctggaagacgggctggcgcaccagacgctgctgggtgtg
acgggctcggggaaaacgttcaccatggcgaacgtcatcgccgatttgcagcgcccgacg
atggtgctggcgccaaacaaaacgctggcggcgcagctctatggcgaaatgaaagagttt
ttcccggaaaacgccgtggaatatttcgtctcgtactacgactactaccagccggaagcg
tatgtgccgagctccgatacctttatcgagaaggacgcgtcggtgaatgagcatatcgag
cagatgcgtctgtcggccaccaaagcgctgctggagcggcgcgacgtggtcgtggtggcg
tcggtctccgctatctatggtctgggcgacccggatctctacctgaagatgatgctgcat
ctcaccaaagggatgatcatcgaccagcgcgccattctgcgccgcctgacggagctgcaa
tatacccgcaacgatcaggcgttccagcgcggtaccttccgcgtgcgcggcgaggtgatt
gatatcttcccggcggaatcggacgagctggcgctgcgcgtcgagctgttcgacgaagag
gtggagcggctgtcgctgttcgatccactcaccggcaccgtcgattccattatccagcgt
ttcaccgtctacccgaaaacgcactacgtcaccccgcgtgagcgcattgtgcaggcgatg
gaagagatcaaagtagagctggcggagcgccgcaaagtgctgctggaaaacaacaagctg
ctggaagaacagcgcctgacccagcgtacccagttcgatctcgaaatgatgaacgagctg
gggtactgctccggcatcgaaaactattcgcgctatctctccggccggggccctggcgaa
gcgccgccgacgctgtttgactatctgccggcggatggcctgctggtggtcgatgaatcg
cacgtgactattccgcagatcggcgggatgtatcgcggcgaccgcgcgcgtaaagagacg
ctggtggaatatggtttccgcctgccgtcggcgctggataaccgcccgctgaaatttgaa
gagttcgaagcgctggcaccgcagacggtgtatgtttcggcgacgcccggcaactatgag
ctggaaaaatcgggcggcgagattatcgaccaggtggtgcgcccgaccggtctgctcgat
ccgattatcgaagtgcgtccggtggcgacccaggtggacgatttgctgtcggaaatccgc
aagcgcgtcgccattaacgagcgcgtgctggtgacgacgctcaccaagcgtatggcggaa
gatttaaccgagtatctggaagagcacggcgaaaaagtgcgctatctgcactcggatatc
gataccgtggaacgtatggagattatccgcgatttgcgtcttggcgagttcgacgtgctg
gtgggcatcaacctgctccgtgaggggctggatatgccggaagtgtcgctggtggctatt
ctcgacgccgacaaagagggcttcctgcgctccgaacgttcgcttatccagacgattggc
cgcgcggcgcgtaacgtgaacggcaaggcgattctctacggcgataaaatcacgccgtca
atggcgaaggcgattggcgaaaccgaacgccgtcgtgagaaacagcaggcgtataacgaa
gagcacggcattgtgccgcaggggcttaacaagaaagtggtcgatattctggcgcttggc
gagaatatcgcgaaaaccaagccgaaaggacgcggaaaagggcgcaccgtggcggatgct
gaagccgctgaactggcgctgacgccgaaagcgttgcagcagaaaattcatcagcttgaa
gcgcagatggtgcagcacgcgcagaacctggagtttgaagaggcggcgcaactgcgcgat
aagcttcatcaactgcgcgagctgtttatcgccgcgtcgtaa
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