Cronobacter malonaticus LMG 23826: AFK66_015655
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Entry
AFK66_015655 CDS
T04062
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cmj
Cronobacter malonaticus LMG 23826
Pathway
cmj03030
DNA replication
cmj03430
Mismatch repair
cmj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AFK66_015655 (dnaE)
03430 Mismatch repair
AFK66_015655 (dnaE)
03440 Homologous recombination
AFK66_015655 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmj03032
]
AFK66_015655 (dnaE)
03400 DNA repair and recombination proteins [BR:
cmj03400
]
AFK66_015655 (dnaE)
Enzymes [BR:
cmj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AFK66_015655 (dnaE)
DNA replication proteins [BR:
cmj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AFK66_015655 (dnaE)
DNA repair and recombination proteins [BR:
cmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AFK66_015655 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
ALX79771
LinkDB
All DBs
Position
complement(3277006..3280488)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHGV
GIKPIIGADFNMQCELLGDDFSHITVLAANNTGYQNLTLLISRAYQRGYGAAGPWIDQQW
LAELGEGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYLELVRTGRPDEER
YLHAAVALAEEKGIPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDPKRPRHYSPQQYL
RTEEEMCELFSDLPEALENSVEIARRCNVTVRLGEYFLPKFPTGDMTTEDFLVMKSKEGL
EERLEFLFPDPEVRAQKRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEMGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFEDGAKNNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDYGEIVYGIGAIKG
VGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALEKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPND
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccacgttttgtgcacctgagagtgcacagtgactattccatgattgatgga
ctggcaaaaacggggccgctggtaaaaaaggcggccgcgcttggcatgcctgcctttgcc
attactgacttcaccaacctgtgcgggctggtcaaattttacggcggcgcgcatggcgtc
ggcatcaagcctattatcggcgccgacttcaatatgcagtgcgagctgctgggcgacgat
ttctcgcatatcaccgtgctggcggcgaacaataccggctatcagaacctgacgctgctt
atctcacgcgcctaccagcgcggttacggcgcagccggcccgtggatagaccagcagtgg
ctggcggagctgggcgaagggctgatcctgctctccggcggccgtcagggcgatgttggt
aagtgtttacttcgtggcaataacgtcatggccgagcaggcgctggcgttttatcaggaa
catttcccggaccgctattatctggaactggtgcgtaccggtcgcccggatgaagagcga
tatctgcatgccgcggtcgcgctggcggaagaaaaaggcataccggtcgtcgctactaac
gacgtgcgctttatcgagccaggcgattttgacgcccatgaaatccgcgtcgccatccat
gacggctttacgctcgatgatccgaaaaggccgcgccactattcgccgcagcaatatctt
cgtaccgaagaggagatgtgcgagctgttctccgatctcccggaggcgctggaaaacagc
gtggagatcgcccgtcgctgtaacgtgacggttcgccttggcgaatatttcctgccgaaa
ttcccgaccggcgatatgaccaccgaagatttcctggtcatgaaatcgaaagaaggtctg
gaagagcgtcttgagttcctgttccccgatccggaagtccgcgcgcagaaacgtccggaa
tatgatgagcgcctggatattgaactccaggtgattaaccagatgggcttccctggttac
ttcctgatcgtcatggagtttatccagtggtcgaaggataacggtattccggtagggccg
ggccgtggttcgggcgcggggtcgctggtagcgtatgcgctgaaaatcaccgatctcgat
ccgctggagttcgacctgctgttcgaacgtttccttaacccggaacgtgtctccatgccc
gacttcgacgtcgacttctgcatggagaaacgcgaccaggtgattgagcacgtggccgat
atgtacggtcgcgacgcggtttctcagattattactttcggcaccatggcagcgaaagcg
gtgatccgcgacgtaggccgcgtgctggggcatccttacgggtttgtcgatcgcatctct
aaactggtgccgcccgatccgggcatgacgcttgccaaagcgtttgaagccgaaccgcag
ctgcaggaaatttacgatgccgatgaagaggtcaaagccctcatcgacatggcgcgcaag
ctcgaaggcgtaacgcgtaacgccggtaaacacgccggtggcgtggtgatcgcgccgacc
aaaatcaccgatttcgcgccgctctattgtgacgagatgggtcatcatccggtcacccaa
tttgataaaaacgacgtggaatacgcgggcctggtgaagttcgacttcttgggcctgcgc
acgctcaccattatcaactgggcgctggagatgattaacgcccgccgtgcgaagcagggc
ctggagcctatcgacatcgcggccattccgcttgatgacaagaaaagcttcgacatgctc
cagcgctcggaaactaccgcggtcttccagcttgaatcgcgcggcatgaaagatctcatc
aagcgtctgcaaccggactgcttcgaagatatgatagccctggtagcgctgttccgtccg
gggccgctgcagtcgggcatggtggataactttatcgaccgtaagcacggacgcgaggct
atctcttacccggatattcagtggcagcacgaaagcctgaaaccggtgctggagccgacc
tacggcattattctgtatcaggaacaggtgatgcagatagctcaggtgctttcgggttat
accctcggcggcgcggatatgctgcgtcgcgcgatgggtaaaaagaaacccgaagagatg
gccaagcagcgctctatctttgaagacggcgcgaaaaacaacggcatcgacggcgagctg
gcgatgaaaatcttcgacctggtggagaaattcgccgggtacggatttaacaaatcgcac
tctgccgcctatgctttggtgtcataccagacgctgtggcttaaagcccactatccggcg
gagtttatggcggcggttatgaccgctgatatggacaacaccgataaagtggtggggctg
gtggatgagtgctggcgcatggggcttaagatcctgccgccagatatcaactccgggctc
taccatttccacgtcaacgactatggagagattgtctacggcattggcgcgatcaaaggc
gttggcgaaggccctattgaggccatcatcgaggcgcgtaataaagacggctatttccgc
gagctgttcgatctctgcgcccgtaccgataccaaaaaacttaaccgtcgcgtactggaa
aaactgatcatgtccggggcgttcgaccgcctcgggccgcaccgcgccgcgctgatgaat
tcgctcggcgacgcgctgaaagcggcggatcaacatgcgaaagccgaggccatcggccag
gcggatatgttcggcgtgctggcggaagagccggagcaaatcgagcaatcctacgccagc
tgccagccgtggccggagcaggtggtgctggatggcgagcgtgaaacgctggggctgtat
ctcactggtcaccccatcaaccagtatctgaaagagatcgagcgctatgtcggcggcatg
cgcttaaaagatatgcatcctaccgaacgtggcaaagtgaccacggcggcgggtttgata
attgccgcgcgggttatggtcaccaagcgcggcaatcgtatcggcatctgtacgctggat
gaccgttcagggcgtcttgaagtgatgttgttcaccgacgctctggaaaaataccagcat
ctgctggaaaaagaccgaatccttatcgtcagcggacaggtcagctttgatgacttcagc
gggggccttaaaatgaccgcccgcgaagtcatggacattgacgaagcccgcgaaaagtat
gcgcgtgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgttcgggaaccattccagtgcatctctactatcag
agggcggatgcacgcgcccggctgcgctttggcgcgacgtggcgtgtctctccgaacgat
cgtttactcaacgatctgcgtggcctgattggttcagagcaggtggaactggagtttgac
tga
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