Cronobacter malonaticus LMG 23826: AFK66_015825
Help
Entry
AFK66_015825 CDS
T04062
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
cmj
Cronobacter malonaticus LMG 23826
Brite
KEGG Orthology (KO) [BR:
cmj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmj03016
]
AFK66_015825
Enzymes [BR:
cmj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AFK66_015825
Transfer RNA biogenesis [BR:
cmj03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AFK66_015825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
DUF4543
Motif
Other DBs
NCBI-ProteinID:
ALX79805
LinkDB
All DBs
Position
3320977..3321507
Genome browser
AA seq
176 aa
AA seq
DB search
MSDQKRLFFALPLPADLQQQIIEWRAAHFAPDAGRPIAAANLHITLAFLGDVSAQKQRTL
SALAGRIQQPGFTLALDDAGHWPRSQVVWLGSRQPPRGLLQLANLLRAQAARSGCPQSAQ
PFHPHVTLLRNAQHPVRLPPPGFGWQLPVREFVLYESRFEQGRTRYQTLQRWSLNP
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaccagaaacggctgtttttcgcgctgcctctgccagccgaccttcagcaacag
attatcgagtggcgcgccgcacactttgcgccggacgcgggcaggccgattgccgccgcg
aatttgcatatcacgctcgcgtttttaggcgatgtcagcgcgcaaaagcagcgcacgtta
agcgcgcttgccgggcgtattcagcagccagggtttacgctggcgctggacgacgccggg
cactggccccgctcgcaggtcgtctggcttggctcccgccagccgccgcgcggcctgctg
cagctcgcgaatttactgcgcgcgcaggcggcacgcagcggttgtccacaaagcgcgcaa
ccctttcatccgcatgtcacattactgcgtaacgctcagcacccggtcaggctgccgccg
ccagggtttggctggcagcttccggtgcgggagtttgtgctgtatgaatcgcgatttgaa
cagggacgtacccgttaccagactctgcaacgctggtctctgaacccataa
DBGET
integrated database retrieval system
