Cronobacter malonaticus LMG 23826: AFK66_016285
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Entry
AFK66_016285 CDS
T04062
Name
(GenBank) RNA polymerase-binding ATPase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
cmj
Cronobacter malonaticus LMG 23826
Brite
KEGG Orthology (KO) [BR:
cmj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmj03021
]
AFK66_016285
Transcription machinery [BR:
cmj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
AFK66_016285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
ALX79896
LinkDB
All DBs
Position
3423171..3426077
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDARMVTLLFPATGENRLYARNDSPVTRVMFNPGDT
VTSHEGWQLKVDEVKEENGLLIYIGTRLDTLEENVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYQSEQYRMPWSGLRGQRTNLIPHQLNIANDVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQLLAGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQH
ESDNPFDTEQLVICSLDFVRRNKQRLEHLCDAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQQNYRPVADAVALLL
AGTHLNDEQLNTLSELIGEQDIEPLLQTANSDRDGAESARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPQRELHTIKLPLPTQYQTAIKVSGIMGARKSAEERARDMLYPEQIYQEFEGD
SGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASQLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSVYEQLIGYLAAPENT
EGFDELIQACRKQHDELKAQLEQGRDRLLEIHSNGGEKAQQLADAIAEQDDDTGLVNFAM
NLFDIVGINQDDRGEHMIVLTPSDHMLVPDFPGLPEDGCTITFNRDVALSREDAQFITWE
HPLIRNGLDLILSGDTGSCTISLLKNKALPVGTLLLELIYVVEAKAPKQLQLNRFLPPTP
VRMLLDKNGNNLAGQVEFESFNRQLSAVNRHTGSKLVNAVQQEVHAILQGGEAQVEKAAR
ELIDAARQEADDKLSAELSRLEALRAVNPNIRDDELAAIEHNRQQVLENLNQASWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacggaaagcgaactgggactgggc
actgtggtggctatcgacgcccgcatggtgactctgcttttcccggctaccggtgaaaat
cgtctgtatgcccgaaatgactccccggtcacccgcgtgatgttcaacccgggcgatacc
gtgaccagccacgaaggctggcagttgaaagtggatgaagtaaaggaagaaaacggctta
cttatttatatcggcacccgtctggatacgcttgaggaaaatgtcgcgctgcgtgaagtg
ttcctcgacagcaaactggtgttcagcaaaccgcaggaccgcctgttcgccggtcagatt
gaccgaatggaccgctttgccctgcgctatcgcgcccgcaaataccagagcgaacagtac
cggatgccgtggagcggcctgcgtggccagcgcacgaaccttatcccgcaccagctcaat
atcgccaatgacgtaggccgccgccacgcgccgcgcgtgctgctggccgatgaagtgggt
ctcggcaaaaccatcgaagccgggatgatcattcatcagcagctgcttgcaggcgcggcc
gagcgcgtgctgattgtcgtgccggaaacgctgcaacaccagtggctggtggagatgctg
cgccgcttcaacctgcgcttctcgctgtttgacgacgagcgttacgccgaagcccagcat
gaatccgacaacccgttcgatactgaacaactggttatctgctcgctggattttgtgcgc
cgcaacaagcagcgccttgagcatctgtgcgacgccgagtgggatctgctggtggtggat
gaagctcatcacctggtctggagcgaagacgccccgagccgtgaatatcaggcgattgaa
cagctggccgaacgcgtgccaggcgtattgctgctaaccgcaacgccggaacagcttggt
atggagagccacttcgcgcgtctgcgcctgctggacccgaaccgcttccacgatttcgcg
cagtttgtcgaagaacagcagaactatcgcccggtggcggacgccgtggcgctgctgctg
gcgggcacgcacctgaacgatgaacagctcaataccttaagcgaactgattggcgaacag
gatatcgagccgcttctgcaaaccgccaacagcgaccgcgacggcgctgaaagcgcgcgc
caggagctggtctccatgctgatggaccgccacggcaccagccgcgtactgttccgtaat
acccgcaacggcgtaaaaggcttcccgcagcgcgaactgcataccattaaattgccgctg
ccgacgcagtaccagaccgcgattaaagtctctggcatcatgggcgcgcgtaaatctgcc
gaggagcgtgcgcgcgatatgctctacccggagcagatttaccaggagtttgaaggcgac
agcggcacctggtggaacttcgatccgcgcgtggagtggctgatgggctatctgaccagc
caccgctcgcagaaagtgctggtgatctgcgcgaaagcggccaccgcgctgcaactggag
caggtgctgcgcgagcgtgaaggcattcgcgccgccgtgttccatgaaggcatgtcgatt
atcgagcgcgaccgcgcggcagcctggtttgccgaagaagataccggcgcgcaggtgctg
ctctgttcggaaatcggctccgagggccgtaacttccagttcgccagccagttggtgatg
ttcgatctgccgttcaaccccgatctgctggaacagcgtatcggccgtctggaccgtatc
ggccaggcgcatgatatccagattcatgtgccataccttgagaaaaccgcgcagtcggtg
ctggtgcgctggtatcacgaagggctggacgcgttcgaacacacctgccctaccggacgc
gcgatttacgacagcgtctatgagcaattgattggttatctggccgccccggagaacacc
gaaggctttgacgagctgattcaggcgtgccgcaaacagcacgatgaactgaaagcgcag
cttgagcagggccgcgaccgcctgctggagatccactccaacggcggtgaaaaagcccag
cagctggctgatgccatcgctgaacaggatgacgatacgggcctggtgaatttcgccatg
aacctgttcgacatcgttggcatcaatcaggacgaccgcggcgagcatatgattgtactt
acgccgtccgatcacatgctggtgccggatttccctggcctgccggaagatggctgcacc
attacgtttaaccgcgacgtggcgctgtcgcgcgaagacgcgcaatttattacctgggag
catccgcttatccgcaacggtctggatctgatcctctccggcgataccggcagctgcacc
atttcgctgctgaaaaacaaagcgttaccggtcggcaccctgctgctggagctgatttac
gtggtcgaagccaaagcgccgaagcagttgcagcttaaccgtttcctgccgccgacgccg
gtccgcatgctgctggataaaaacggcaataacctggcaggccaggtggagtttgaaagc
ttcaaccgccagctcagcgcggtgaaccgtcataccggcagcaagctggtgaacgcggtg
cagcaggaagtgcatgcgattctgcagggcggcgaagcgcaggtggagaaagcggcacgc
gagcttatcgacgcggcgcgtcaggaagccgatgacaaactctccgccgagctgtcgcgt
ctcgaagcgctacgcgccgtgaacccgaacattcgcgacgacgaactggcggcgatcgag
cataaccgtcagcaggtgctggagaatcttaaccaggcgagctggcgactggatgcgctg
cgtcttatcgtagtgactcaccagtaa
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