Cronobacter malonaticus LMG 23826: AFK66_018435
Help
Entry
AFK66_018435 CDS
T04062
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cmj
Cronobacter malonaticus LMG 23826
Pathway
cmj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFK66_018435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmj03021
]
AFK66_018435
03400 DNA repair and recombination proteins [BR:
cmj03400
]
AFK66_018435
Enzymes [BR:
cmj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFK66_018435
Transcription machinery [BR:
cmj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFK66_018435
DNA repair and recombination proteins [BR:
cmj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFK66_018435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
LPD39
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ALX80235
LinkDB
All DBs
Position
complement(3803793..3808016)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKINAKGEGMVLTGPKEAERLYRSG
QAELHARVKVRITEYEKDANGEFVSKTSLIDTTVGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRNGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVARNTLLNEQWCDILEANSVDSVKVRSVVTCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGYIRFTDMIDGQTITRQTDELTGLSSLVVLDSSERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEVAGIVSFGKETKGKRRLVITPVDGGDAYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVQAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIMDAGSSEFLEGEQVEYSRVKIANRELEANGKVSATYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGNDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcgtcgccagacatgatccgttcctggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtaccttcaaaccggagcgcgatggtctgttctgcgcccgt
atctttgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatttgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgaa
cgtatgggccacatcgaactggcttccccgaccgcgcatatctggttcctgaaatcactg
ccgtcccgtatcggtctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtat
ttcgaatcttacgtggttatcgagggtggcatgaccaacctcgagcgcagccagatcctg
actgaagaacagtacctggacgcgctggaagagttcggtgacgaattcgacgcgaaaatg
ggcgccgaagctattcaggctctgctgaaaagcatggacctggaagccgagtgcgagcag
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgc
atcaagctgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gtgctgccagtgctgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtttgctggatctggcggcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaggcggtagacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatcactggcagacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgcgtggactactctggtcgttccgtaattaccgtaggtccgtac
ctgcgtctgcaccagtgcggcctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgcgaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagcggtcgtttgggatatcctggacgaagttatccgtgagcacccg
gtactgctgaaccgtgcgccgaccctgcaccgtctgggtattcaggcgttcgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcttataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgcgacaagattaacgcc
aaaggcgaaggcatggtgctgactggtccgaaagaagcggaacgtctgtaccgctcaggc
caggctgaactgcacgctcgcgtaaaagttcgtatcactgaatacgaaaaagacgcgaac
ggcgagttcgtttccaaaaccagcctgatcgacaccacggttggccgtgccatcctgtgg
atgatcgtaccgaaaggtctgccgttctctatcgtgaaccagccgctcggtaaaaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttattttt
gctgaccagaccatgtataccggttttgcgtatgctgcacgttctggtgcgtctgttggt
atcgacgatatggttatcccggcgaaaaaagccgagatcatcgccgaagccgaagcggaa
gtggccgagatccaggagcagttccagtctggtctggttaccgctggcgagcgctacaac
aaagtcatcgatatctgggccgcggcgaacgatcgcgtatccaaggcgatgatggacaac
ctgcaaactgaaaccgttatcaaccgtaacggcgaagaagagcagcaggtttccttcaac
agcatttacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacccacggtgctcgt
aagggtctggcggataccgcactgaaaaccgcgaactccggttacctgactcgtcgtctg
gttgacgtcgcgcaggatctggttgtgaccgaagacgattgcggcacgctggaaggcatt
accatgaccccggttatcgagggtggcgatgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtaacggcagaagacgtgctgaagcctggcacggcggatatcctggttgcgcgc
aacacgctcctcaacgagcagtggtgtgacatcctggaagctaactccgtagacagcgtt
aaagttcgctccgtagtaacctgtgacaccgacttcggcgtctgtgcgcactgctatggt
cgtgacctcgcgcgtggccacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtactcagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgcctg
agcaacgcgaagtcggttgttaactccagcggtaagctggttgttacttcccgtaacacc
gagctgaaactgatcgacgaattcggccgtaccaaagaaagctataaagtgccttacggt
gctgttatggcgaaaggtgatggcgagcaggtcgctggcggcgaaaccgttgcgaactgg
gatccgcataccatgccggttatcaccgaagtggcgggttacattcgtttcaccgacatg
atcgacggccagaccattactcgtcagactgacgagctgaccggtctgtcttcgctggtg
gttctggattcttcagaacgtaccgcgggcggtaaagatctgcgtccggcgctgaaaatt
gtcgacgctaacggtaacgacgttctgatcccgggcaccgacatgccggcacagtacttc
ctgccaggtaaagcgattgttcagctggaagatggcgttcagatcagttccggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggatctgttcgaagcgcgtcgtccgaaagagccggcaatccttgctgaagtggcg
ggtatcgtctccttcggtaaagaaaccaaaggcaaacgtcgtctggttatcaccccggtt
gacggcggtgacgcatacgaagagatgatcccgaaatggcgtcagctcaacgtgttcgaa
ggcgaacgtgtggaacgtggtgacgtgatctccgatggtccggaagcgccgcatgacatt
ctgcgtctgcgtggcgttcaggctgtgacccgttacatcgttaacgaagtacaggacgtt
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcatggacgcgggcagctccgagttcctggaaggtgagcaggtt
gaatactctcgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaagtcagcgcg
acttacatgcgcgacctgctgggtatcaccaaagcgtctctggccaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgcgtgctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttacgcgtaccaccaggatcgtatgcgccgtcgcgctgcaggtgaactcccggca
gcaccgcaggtgactgcggaagacgcgtctgcaagcctggcagaactgctgaacgcaggt
ctgggcggcaacgacaacgagtaa
DBGET
integrated database retrieval system
