Callorhinchus milii (elephant shark): 103171628
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Entry
103171628 CDS
T03088
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk00100
Steroid biosynthesis
cmk01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
103171628 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cmk01006
]
103171628 (fdft1)
Enzymes [BR:
cmk01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
103171628 (fdft1)
Prenyltransferases [BR:
cmk01006
]
Terpene biosynthesis
Squalene/phytoene synthase
103171628 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
Cu_bind_CorA
Motif
Other DBs
NCBI-GeneID:
103171628
NCBI-ProteinID:
XP_042201797
LinkDB
All DBs
Position
Unknown
AA seq
380 aa
AA seq
DB search
MSETLRTCYVYLNQTSRSFAAVIQALDGELRQAVCIFYLVLRALDTVEDDMTIPLDVKVL
LLQNFHTFLYQPDWRYCESQEKDRQVLEDFPSISKEFRNLAMVYQDVIANICHKMGVGMA
QFLEKKVNSLKDWDTYCHYVAGLVGIGLSRLFSASELEDQVVGQDTALANSMGLFLQKTN
IIRDYLEDQREGREFWPREVWSKYAETLSDLASPANLQTALQCMNDLITGALQHVPDVLK
YLSRLHNQSVFNFCAIPQVMAIATLAACYNNPHVFRGVVKIRKGQAVTLMMGATNIDAVK
RIMFQYSRAIGQKVPSTDVSAARTQQILSRIQTLSEAEGRLLSRSHLAPIYVSFAMFFAA
VSWQYWRMLSQEQDKYVPRQ
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagactcttcggacgtgttacgtttacctgaaccagacgagccgaagttttgcg
gctgttatacaggcgctggacggtgaacttcggcaggcagtgtgcatcttttacctggtg
ctgagagctctggacacggtggaggatgacatgacaattcccctggatgtgaaggtgctg
ctgctgcagaacttccacaccttcctgtaccagcccgactggaggtattgtgagagccaa
gaaaaggaccggcaggtgttggaggacttcccatcgatttcaaaggaattccgtaatctg
gccatggtgtaccaggatgtgattgcaaacatctgccacaagatgggagtgggaatggca
cagttcctggagaaaaaagtaaattccctgaaggattgggacacgtattgtcactatgtg
gcaggtctggtgggaatcggcctctctcgccttttctcagcttccgagctggaggaccag
gttgtaggtcaagacacagcgctcgccaactccatggggctgtttctgcagaaaacaaac
atcatccgagactacctggaggaccagcgagagggtcgggagttctggcccagagaggtg
tggagtaagtacgcagagacattgtcagatctggccagccctgcaaacctccagactgcc
ctgcagtgtatgaacgatctgatcaccggtgcactgcagcacgttcctgatgtcctcaaa
tacctctcacgcctccacaaccagagtgtcttcaacttctgtgccatcccacaggtgatg
gctattgccactctggctgcctgttacaataacccacatgtgttccgaggtgtggtgaag
atcaggaaaggccaggctgttactctgatgatgggggcgaccaatatcgatgctgtcaaa
aggatcatgttccagtattcccgagcaattggacagaaggtacccagtactgatgtctcg
gcggctagaacacagcaaatcttgagcaggatccagactctgagcgaggctgaaggtcga
ctcctctcacgcagccacctggcgcccatctacgtctccttcgccatgttttttgccgct
gtcagctggcagtactggcggatgctgtcccaggagcaggacaagtatgtgccgagacaa
tga
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