Callorhinchus milii (elephant shark): 103172020
Help
Entry
103172020 CDS
T03088
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103172020 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmk03041
]
103172020 (dhx8)
Enzymes [BR:
cmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103172020 (dhx8)
Spliceosome [BR:
cmk03041
]
Complex C
Other components
Step II factors
103172020 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
GIPC1_GH2
AAA_22
AAA_19
PRP38_assoc
nSTAND3
AAA_16
TsaE
Sigma54_activ_2
Flavi_DEAD
PhoH
ABC_tran
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103172020
NCBI-ProteinID:
XP_042199156
LinkDB
All DBs
Position
Unknown
AA seq
1207 aa
AA seq
DB search
MAEAAGEELRKLEYLSLVSKVCTELDNHLGINDKDLAEFIISLAEKHNTFETFKRMLLKN
GAEFTDSLISNLLRLIQTMRPPPKPLTSSKAAETTKPKSEKEKMKELFPVLCMPDNPTIK
TLLDPDDLKVAADALKELEALMPSKEDIRKSSKHSSVDKGKRRKRSRSRDRKRRRHSRSR
SRSRDRTRSRTGRRSRSRSRSGSRNRDHKERERERERERERERGVRLGGEKAGEKWKERH
VDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVV
SKGQRVKVKVLSFTGSKTSLSMKDVDQESGEDLNPNRRRNVGGETSEETTMRNPDRPSNL
SLVNTPEVEDDMLERKRLTKISDPEKWEIKQMIAANVISKEEYPDFDEETGILPKVDDEE
DEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREMKQAQ
REAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPQDIPEWKKHAFGGNKASYGRK
TQMSILEQRESLPIYRLKEQLVQAVHDNQVLIVIGETGSGKTTQITQYLAEAGYTTRGKI
GCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLID
PNLSQYAIIMLDEAHERTIHTDVLFGLLKKTVKKRPDMKLIVTSATLDAVKFSQYFYEAP
IFTIPGRTYPVEVLYTKEPETDYLDSSLITVMQIHLTEPPGDILVFLTGQEEIDTACEIL
YERMKSMGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYY
VVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEML
TTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLL
TRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKA
KFHQAEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDV
VSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHE
LVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRI
SRAFRRR
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggccgccggggaggagctccggaagctcgagtatctgtccctggtgtccaag
gtctgcactgagctggacaaccatctgggcatcaatgacaaggacctggcggagttcatc
atcagtctcgcggagaagcacaacacgttcgagactttcaagcggatgctcctgaaaaat
ggggccgagtttacggattcgctcatcagcaatttgttgcgtctgatacagaccatgagg
ccacctcccaagcccttgacgtccagcaaagctgctgaaaccaccaaaccgaagtcggaa
aaggaaaagatgaaggagcttttcccggtgctctgtatgcccgacaaccccacgatcaag
acgctgctggatccagatgatttgaaagtggcagccgatgccctgaaggaactcgaggcc
ctgatgccgtcgaaggaagacattagaaagagcagcaagcacagctcggttgacaaaggc
aagaggaggaaacgcagccggagtagagaccgaaagcgtcgacggcattccagatcccga
tcacgttcccgggaccggaccaggagcagaaccggcaggaggtccaggagccgaagtcga
agcgggagccggaacagagaccacaaggagagagagagggaaagggagagggagagggag
agagagaggggcgtccgcctcgggggagagaaggccggagagaagtggaaggaacgtcac
gtagacagacccccgccagaggagccctcggtgggcgacatctacaacggcaaagtcacc
agcatcatgcagttcggatgctttgtgcagctggaagggctcaggaaacgatgggagggt
ttggtgcacatctccgagctcaggagagagggacgtgtggccaacgtggcggatgtcgtt
agcaaaggccagagagtgaaagtcaaggtgttgtctttcactggatccaaaaccagcctc
agtatgaaggatgtggatcaggaaagcggagaggacctgaatccaaaccgccgcaggaac
gtggggggagagacgagcgaggagaccaccatgaggaacccggacagacccagtaacctg
tcgctggtcaacacgcccgaggtggaggatgacatgctggagcgcaagcgactgacaaag
atctcggacccggagaagtgggagatcaaacagatgatcgcggcgaacgtcatctccaaa
gaggagtaccctgacttcgacgaagagacggggattcttcccaaggtggatgacgaggaa
gacgaggacctcgagatcgagctggtggaagaggagcctccgttcctcaggggccacacc
aaacagagcatggacatgagtcctgtcaaaatagtcaagaatcccgacggctccctatcc
caggccgccatgatgcaaagtgcgttggcgaaggagaggcgggagatgaagcaggctcag
cgggaggcggaaatggactccatccccatgggactgaacaagcactgggtcgatccacta
cccgatgttgacgggcgacagattgcggccaacatgcgaggcatcgggatgatgccccag
gacatccccgagtggaagaagcacgcgttcggggggaacaaagcctcttacggacgcaaa
acccagatgtccatcctggaacagagagaaagcttgcccatctacaggctgaaagagcag
ctggtccaggcggttcacgacaaccaggtgctgatcgtgatcggggagacgggctccggt
aaaaccacgcagatcacccagtacctggcggaggccggctacaccacccgggggaagatt
ggctgcacgcagccccggcgtgtggctgccatgtccgtagccaagcgtgtatccgaggag
tacggctgctgcttggggcaggaggttggctacaccatccgattcgaagattgcaccagc
cccgagacggtgatcaagtacatgacggacgggatgttgctacgagagtgtcttatcgac
cccaacctctcgcagtacgccatcatcatgctggacgaggcccacgagaggacaatccac
actgacgtcctcttcgggctgttgaagaagaccgtcaagaaacggcccgatatgaagttg
atcgtgacgtcagccacgctggacgcggtcaagttctcacagtatttctacgaggctccg
atcttcaccatccccgggaggacgtacccggtggaggttctttacacgaaggaacccgag
acggattacctggactccagtctgatcacagtcatgcagatccatctcacagagccaccg
ggagatatcctggttttcctgacgggtcaggaggagattgacacggcgtgcgagatcctg
tacgagcgaatgaagtccatggggccggacgtgcccgagttgattatcctgcctgtgtac
tcagccttgccgagcgagatgcaaaccagaatattcgacccagcgcctcccggcagcagg
aaggttgtgatcgccaccaacattgcggaaacctcactgaccatcgacggcatttactat
gtggtggaccccgggttcgtcaagcagaaagtctacaactccaaaaccggcatcgatcaa
ctagtggtcactccaatatcacaggcacaagccaagcagcgagccgggcgcgcaggcagg
acagggcccggcaagtgctacaggctgtacaccgagcgagcctacagagacgagatgctc
accactaatgtgcccgagattcagaggaccaatctggccagcaccgtgctgtcccttaag
gctatgggcatcaatgacctgctatcgtttgatttcatggacgcccctcccatggagacg
ctcatcacggccatggagcagctgtacactctgggggcgctcgacgacgagggtttgctg
acgaggctcggacgcaggatggcggagtttcccctggagccgatgctgtgtaaaatgctg
atcatgtccgtgcacctcggctgtagcgaggaaatgctgactatcgtttctatgctgtct
gtacagaacgtcttctatcgacccaaggataaacaagccctggccgatcagaagaaggcc
aagttccaccaggcggaaggcgaccacctcaccttgctcgccgtctacaactcgtggaag
aacaacaagttctccaacccctggtgctacgagaacttcatccaggctcgctccctccgt
agggctcaggacatccgcaagcagatgctcgggatcatggacaggcacaaactggacgtg
gtgtcgtgcggcaaagccacggtgcgggtccagaaagccatctgcagcggcttcttccgc
aacgcggccaagaaagacccccaggagggttaccggaccctgatcgaccaacaggtggtg
tacatccacccttccagcgccctcttcaaccgccagccagaatgggttgtgtatcacgag
ctggtcctgaccaccaaggagtacatgcgagaggtcaccaccattgacccccgttggctg
gtggagttcgctccggccttcttcaaggtctccgaccccaccaagctcagcaagcagaag
aagcagcagcggctggagcctctgtacaaccgctacgaggagcccaacgcctggagaatc
tctcgcgcgttcaggcgccggtga
DBGET
integrated database retrieval system
