Callorhinchus milii (elephant shark): 103172802
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Entry
103172802 CDS
T03088
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103172802 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmk03021
]
103172802 (smarcc2)
03036 Chromosome and associated proteins [BR:
cmk03036
]
103172802 (smarcc2)
Transcription machinery [BR:
cmk03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103172802 (smarcc2)
Chromosome and associated proteins [BR:
cmk03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103172802 (smarcc2)
PBAF complex
103172802 (smarcc2)
GBAF(ncBAF) complex
103172802 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
103172802
NCBI-ProteinID:
XP_042200283
LinkDB
All DBs
Position
Unknown
AA seq
1182 aa
AA seq
DB search
MAVRKKDGGPNVKYFESSDSVSQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNPPLTKLPMKCFLDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIYLNSEIEPKVLSKLKDIVKRHQGTVTEEKSNASHIVFP
VPGSAEEEEWVRPVMKREKQVLLHWGYSPDSYDTWIPANEIEASIEDPPSAERPRKVHAK
WIMDTDTFNEWMNEEDYEVNDERNPVVRRKRISAKTLTEEVHSPDSDRRDKKGSSHKKRK
RSPSPSPTPDSKKKNPKKGRSPATPYTKSKRGHREEDQEDLTKDMDEPSPVPNVEEVTLP
KTVNTKKDSETAPVKGGTMTDLEEQEEDNLETTGKDEEDTSAGGKGEQTKNTDLHEDNVT
EQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQ
EYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTP
SGLVPLQPKAPQSSASQQMLNFPDKNKEKTADMQNFGLRTDMYAKKNVPSKSKAAACATR
EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPL
AYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPAALVEAHIKKV
EDAAKVTGKADPTYGLDSSGIAGTTPDEPEKSEEGADELKSDAQTAEEKKEAKEHKEAPT
EDENKEKQSEASRKEEEKGKECEAEKENDKSDAEIAEAEKDKENKEFQDDGKKDVETDAE
KKAKVERDIGEGNLATAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLR
HFEELETIMDREREALEYQRQQLLSDRQAFHMEQLKYAEMRARQQHFQQMQQQQQQHQLP
SGPQPSQQPGLLPASVQPVPPAAIQQAPVSQASGDTMTSAVPQPPAAPQQQQQQQQQTTA
APQAQPQQTAQPPNIPHGQTAFPGQPAPPSQLNPSPVGPPAALPGNTPDGIPHSVTESIP
AHLPDPAVHGYVPSSMRGSLAGEPVIRPSSLHPNLPGACVPPSVSLTPNPGSAAAQSPAI
VAAMQGSSMPTASPLAEPGASIQTDLMAPPPSVVAASVPSSQ
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggcccgaacgtcaagtacttcgagtcgtcggactcg
gtgtcgcagttcgacaacgtcaggctgtggctcggcaagaactacaagaagtacattcag
gcagagcctccgaccaacaagtccctgtccagcctcgtggtgcagctgctgcagttccag
gaggaggtgtttgggaaacatgtgagcaatcctccactcaccaaactgcctatgaaatgc
tttctggatttcaaagccggaggagctctgtgccatattctcgcagctgcgtacaaattc
aagagtgaccaaggatggcgacgcttcgactttcagaacccatctcgtatggaccgcaac
gtggagatgtttatgaccattgaaaagtctctggttcagaacaactgcttgtcccggccc
aacatttacctgaactccgaaattgagcccaaggtgctgagtaagctgaaagacatcgtt
aagaggcaccagggaacggtgacagaagagaagtcaaacgcatcgcacatcgtctttcct
gtccccggcagcgccgaggaagaagagtgggttcggccggtaatgaagagggaaaaacag
gtcctcctgcactggggatattccccggacagttacgacacgtggattccagccaacgag
atcgaggcgtcgattgaggacccgccatccgcagagcgaccccgcaaggtccacgccaag
tggataatggacactgacactttcaacgaatggatgaacgaggaagattacgaggtgaat
gatgagcggaatcccgtggtgcggaggaaaagaatttcggccaaaaccttgaccgaagag
gtgcacagccccgactccgataggagagacaagaaggggagcagccacaagaagaggaag
cgttccccatcaccctcacccacccccgactccaagaaaaaaaaccccaagaaaggacgc
agtcctgccacaccatacaccaagtcaaagcgtggccaccgagaggaggaccaggaggac
ctcaccaaagacatggacgaaccctcccctgtccccaacgtggaagaggtcaccttgccc
aagaccgtgaataccaagaaagactccgagacagctccagtgaaaggtggcaccatgact
gatttagaggagcaggaggaggataacttggagaccacaggcaaggacgaggaggacact
tccgcgggggggaagggcgagcagacgaagaacaccgacctacacgaggacaacgtgacc
gagcaaacccaccacatcatcatccccagctacgccgcctggttcgactacaacagcgtc
cacgccatcgagcgacgcgctctcccggaattcttcaacgggaaaaacaagtccaagacc
ccggaaatttatctggcataccgtaattttatgattgacacgtaccgcctgaatccccag
gaatatcttacctccacggcctgccgtaggaacctggcgggggacgtgtgcgctatcatg
agggttcatgctttcctggagcagtggggtttgatcaactatcaagtggacgcagagagc
agacccacccctatgggacctccccccacctcacatttccatgtgctggcggacacaccc
tctggcctcgtgcctcttcaacccaaagccccccagtcgtctgcgtcccagcaaatgctc
aacttccccgacaaaaacaaggagaagacggcagacatgcagaactttgggctgcgcacg
gacatgtacgccaagaaaaacgtcccctctaagagtaaggcggcagcttgtgcaacacga
gaatggacagaacaggagacactcttactgcttgaggccctggagatgtacaaagacgat
tggaataaagtctcggagcatgtgggcagccggacgcaggacgagtgtatcctgcacttc
ctgcggctgccgatcgaggacccctacctggaggactcggaggcctcgctgggacccctg
gcctaccagcccatccccttcagccagtcaggcaaccccgtcatgagcaccgtggccttc
ctcgcctccgtggtcgacccacgagtggcctctgcagcagccaagtcagcgctggaggag
ttctccaagatgaaggaggaggtgccggcggctctggtcgaagctcatatcaagaaggtg
gaggacgcggccaaggtgaccgggaaagcggatcccacgtacggcctggacagcagtggg
atcgcggggacgaccccggatgagccggagaaatcagaggagggggccgatgagctgaag
tcggacgcgcaaacggcagaagagaaaaaagaagcaaaggagcacaaggaggcgccgact
gaggacgagaataaggagaagcagtcggaggcttccaggaaggaagaagagaaaggaaaa
gagtgcgaggcggagaaggagaacgacaagtccgacgcggagatcgccgaggcggagaag
gacaaagaaaacaaagaattccaagacgacgggaagaaggacgtggagacggacgcggag
aagaaagccaaagtggagcgggacatcggggaggggaacctggccacggccgctgcagcc
gcactagcagcagccgctgtcaaggccaagcacctggccgcggtggaggagaggaagatc
aagtcgctggtggcgttgctcgtggagacgcagatgaagaagctggagatcaaactgcgg
cactttgaggagctggagaccatcatggaccgggagcgagaggcgctggagtaccagagg
cagcagctgctgtccgacagacaggccttccacatggagcagctgaagtacgcggagatg
cgagcgcggcagcagcacttccaacagatgcagcagcagcaacagcagcaccagctgccc
tcgggccctcagcccagccaacagccagggctgctgccagcctccgtgcagcccgtgccc
cccgcagccatccagcaggcgccggtcagccaggcctcgggggacaccatgacctcggcc
gtgccccagccccccgccgccccccaacagcaacagcagcagcaacaacagacgacggcc
gcccctcaagctcaaccccagcaaaccgcccagccgcccaacattccccacggtcagaca
gcgttcccgggccagcccgctccgccgtcccagctgaaccccagcccagtggggccgccg
gcggctttgcctggtaatacgccggacggcattccacatagcgtcacggagagcattccc
gcccatctgcccgacccggccgtgcatggctacgtacccagcagcatgcgtgggagtctc
gcgggcgagcccgttattcggccgagctctctgcaccctaacctgccaggtgcctgcgtc
ccaccctccgtgtctttgacccccaacccaggttcagccgccgctcagagcccggcgata
gtggcagccatgcaggggagctcgatgcccacggccagtcccctggcagagccgggagcg
tcgatacagacagacttgatggctccccccccctcggtggtagctgcttctgtcccctcc
tcacagtga
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integrated database retrieval system
