Callorhinchus milii (elephant shark): 103174841
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Entry
103174841 CDS
T03088
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03420
Nucleotide excision repair
cmk04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103174841 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
103174841 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cmk04121
]
103174841 (ddb1)
03400 DNA repair and recombination proteins [BR:
cmk03400
]
103174841 (ddb1)
Ubiquitin system [BR:
cmk04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
103174841 (ddb1)
DNA repair and recombination proteins [BR:
cmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
103174841 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
103174841 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
103174841
NCBI-ProteinID:
XP_007885605
UniProt:
V9K9R8
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTLADDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGK
IAVMELFRPKGECKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQVPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGALIIGQESITYH
NGDKYLAIAPPAIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEREEQMDGNITVKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVAGMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSTRD
TDDMLVLSFVGQTRVLMLNGEEVEETEMPGFVDDQQTFYCGNVAHQQLIQITSGSVRLVS
QEPKSLVSEWKEPNGKNVSVASCNSSQVVVAVGRVLYYLEIHPVELRQISSIEMEHEVAC
LDITPLEGSTMSPLCSVGLWTDISARILKLPSFETMHKEMLGGEIIPRSILMTTFEGSHY
LLCALGDGALFYFGLDIETGLLSDRKKVTLGTQPTMLRTFRSLSTTNVFACSDRPTVIYS
SNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLNESP
KRICYQEASQCFGVVSSRVEVLDPSGGTTVLRPSASTQALSTSVSSSKLFPSSTSQHESS
FGDEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSIVSCKLGKDTNTYFTVGTAMVYPEEA
EPKQGRIIVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT
ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD
DDNFLGAENSFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETS
TPTLGSVLFGTVNGMIGLVTSLSESWYNFLLDVQNRLNKVIKSVGKIEHSFWRSFHSERK
TEPATGFIDGDLIESFLDLNRTKMQEVAVGLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtcgtgacggctcagaagcccaccgcggtgaacgcctgcataacc
gggcatttcaccttggcagatgatctgaacctgctgattgccaagaacaccaggctagag
atctatgtggtgactccagagggtttgcgccctgtcaaggaagtgggcatgtatggcaag
atagccgtgatggaactctttcgacctaaaggggaatgcaaagacctgctattcattctg
acagcaaagtataatgcctgcatcttggagtacaaacagaacggagacagcattgatatc
atcacacgggcccatggaaacgtgcaggaccgcattggccgtccctctgagacgggaatc
ataggtatcgtggatcctgaatgtcggatgataggcctgcggctgtacgatgggctattt
aaagtgatcccactggacagagacaataaagagctgaaggccttcaacatccgtctcgaa
gagttgcatgtgatcgatgtgaagttcctctatggctgccaggtcccaaccatctgcttt
gtctatcaggacccccagggacgtcacgtaaagacctatgaagtatctttgagggagaag
gaattcaacaagggtccgtggaaacaggaaaatgtagaggccgaggcatctatggtcatt
gcagttccagagccatttggaggggccttgatcataggccaggagtccattacataccat
aatggagacaaatacctggccatagcaccaccagctatcaagcaaagcaccattgtatgt
cacaaccgcgtagatcccaacggctctcggtacctgctaggagacatggaagggcgactg
tttatgctgttgctggagcgggaggaacagatggatggaaatatcactgtcaaagacctg
cgggtggagcttctgggagagacctctattgcagaatgcctgacatatcttgacaatgga
gttgtgtttgttggatctcgccttggagactcccagctggtcaaattaaacgtagacagc
aatgagcaaggctcttacgttgctggcatggaaaccttcaccaacttgggccccattgtg
gacatgtgcgtcgtagatctggaaaggcaaggccagggccagctcgtcacctgttcagga
gcgtttaaggaaggctcactgagaatcatccgcaatgggattggtatccatgaacatgcc
agcattgatcttcctggtattaagggtctgtggcctctgcgttctgactccacacgggac
actgatgacatgctggtgctctcttttgttggacagactcgtgtattgatgctgaatggg
gaggaggtggaggagactgagatgccaggattcgtggatgatcagcagaccttctactgt
ggtaatgtggcccaccagcagctcattcagataacgtctgggtcagtgcgactggtcagc
caagagcccaaatcactggtcagtgaatggaaggaacccaatggaaagaacgtgagtgtg
gcatcctgcaacagcagccaggtggtggtggctgtgggccgtgtgctgtattacctggag
atccatcctgtagagctcagacagatcagctccattgagatggagcacgaggtggcatgt
ctggatatcactcccctggagggcagcacaatgtcacccttatgttctgtgggtctttgg
acagacatttcagctcggatcctcaagctgccatcgtttgagaccatgcacaaagagatg
ctcggaggagaaatcatcccacgctccatcttgatgacgacattcgagggcagccactac
ctgctgtgtgctctgggcgacggcgctctcttttactttgggcttgatatagaaacaggt
ttattgagtgaccgaaagaaagtcactctgggaacacagcccacaatgctgcgaaccttc
cgctctctgtccaccacaaatgtctttgcctgctccgaccggcccactgtcatctacagc
agcaatcacaagctggtcttctccaatgttaacctcaaagaagtaaattacatgtgtccc
ctgaactctgagggttaccctgacagcttggccttagccaacaacagcactttaaccatc
ggaaccattgacgaaatacagaaattacacatccgcacggtgccgcttaatgagtctccg
aagaggatctgttaccaggaagcgtcccagtgctttggtgtggtcagtagcagagtggag
gtgctggatcccagtggaggcaccaccgtgctgagaccgagtgccagcactcaggctctc
tccaccagtgtcagttccagtaagctcttccctagcagcacgtcacagcacgagagctcg
tttggggatgaagtggaagttcataatctgttaatcatagaccagcacacattcgaagtt
ctccacgctcaccagttcctgcagaacgagtacgcactaagtattgtgtcttgcaagctg
ggcaaagacacaaatacttatttcaccgtgggcacggcaatggtttatcccgaggaagca
gaaccaaagcaaggccgcatcattgttttccagtattccgacggcaaacttcagactgta
gcagagaaagaagtgaaaggtgccgtctattctatggtggaatttaatggcaaactgctg
gcgagcatcaatagcacggtacggctgtatgaatggacagcggagaaggagttgcgtaca
gagtgtaaccactacaacaacattatggccctttatctgaagacaaagggagacttcatc
ctggtgggggacctcatgcgctcagtgctgcttctcgcatataaaccaatggaggggaat
tttgaagagattgcacgagacttcaaccccaattggatgagtgctgtggaaatattagat
gatgataatttcctgggtgcagaaaactccttcaacttgtttgtatgtcagaaggacagt
gcggccaccacagatgaggaacggcagcaccttcaggaggtgggcctcttccacctggga
gagtttgtcaacgtcttttgtcacggctcactggtgatgcagaacctgggcgagacgtcc
acacctaccctgggttcggtgctcttcggcacagtcaacggcatgatcggtctggttact
tcactgtccgagagttggtataacttcctgctggatgtccagaatcgactgaacaaagtt
atcaaaagtgtgggcaagatcgagcattcattctggaggtcgtttcactccgagcggaag
acagaacctgccacaggcttcatcgatggagacctcatcgagagcttcctggatctcaac
agaaccaagatgcaggaggtggctgtaggcctacagattgacgatgggagtggaatgaag
agagaagcaacagtcgatgatctgataaagatagtggaagagctgaccagaatacattag
DBGET
integrated database retrieval system
