Callorhinchus milii (elephant shark): 103175449
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Entry
103175449 CDS
T03088
Symbol
tnrc6c1
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103175449 (tnrc6c1)
03036 Chromosome and associated proteins [BR:
cmk03036
]
103175449 (tnrc6c1)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103175449 (tnrc6c1)
Chromosome and associated proteins [BR:
cmk03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103175449 (tnrc6c1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
RRM_1
UBA_7
UBA
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
103175449
NCBI-ProteinID:
XP_042198308
LinkDB
All DBs
Position
Unknown
AA seq
2028 aa
AA seq
DB search
MRLHLMTEMEEISPDLRKKPKDVKEYAEKTRQLKLNAYQSDAWQKAVFEGRDSRESEFKA
AKEPQEEIKSEKEPETKEEDHLMEEKKKKKQEDKKKKEAAQKKVAEQKTKVPESTKTNQN
QPQPANSSNSLSTTTITNSSGSNGKRASVNSQQQALSRYPPREVPPRFRHQEQKQLLKRG
QPLPPGTAISNSLGQVVANSSQHNVQQAASGQQQHLSKGQTDHSYSGLGPHYENSQWGQS
PFRSEPNSIWDKVIIDGSDKEAWPSISGTETETASECTDTDSASNCGSENSSMATGSAPG
NFNGQNKNCNNDGNGALVQSSSNQSAIGGGANGGNGNSSRVWGVAPGSAPGIGHCSATIG
SGKMDSIISVNPNCWGTSTSTASINLNLNPNANPSAWPVVGHEIQGTVGGGITSSVCSPN
IPIGQNLGNPNSNPNNGPTGSLNTWGTLLQQENTDTQTPTSQNVSFSVQPQNLNTDGPNN
TNPINSSPNPLNAMQANGLPNVAVQGGWAMTVGMGAINPSHLQNLPIANGASAVSQLNGG
SGEGINNPSCNSVWGLPHSNPTTTNGNSGFSQGNGDTVNSVLSLSAKQALASNSNSAVQK
DVGNSAWDSGPPTSPGVVSWTRPGTVGGLHSGPNSIGAWGSPSSSRNTSNGVNGEWGKPL
NQHSNNEANGNGKGSSSGWDGLCITNQTPVMQQGNEQINSWAKPSASGTTASEGSTESGG
SNHDGSTGRGSGGGQGGGRQRMDKGMNDQQGLLKNVVPRPDLDPRVLCNTGWGQTPVKQN
MGWGVEEAPRVERKNDIGTEAWGSAAAQFSNSGGKSDGSTMNSTNTSSVSGWGNPPPPVM
SNNTGWGDKTSNGQGGWGDSANSTAVTAAAKSGHAWAGVSNQEEKPSSWADSQKSKPHNW
GEGQKNTQGWTSGGGDWTDSAVGPGPLGEGKKPNSSWDNDNRTGSNWNETTRSQTSGWGN
GTNGKPGPNAGWGEPSKSNAPQNWGNKPHDNNASSWGGATTVKQSGSGWAGGPLSAKQKD
SESTGWEEPSPPSIRRKMEIDDGTSAWGDPSNYVKKTVNLWDRNNPVIHSSNNNVAEQPP
PQPHQSSAVQNRSPLLGSGWGETLSVPAKAETSWGEPPSPATTVDNGTSAWGKPPNNNST
WGDHSAESTGNFGRGNVPTAVPPMCKPASKSMQEGWVSSGDEMGLSSNHHPSWEEDEGEM
GMWNNTAPQESNSSCNSSGWGSANKKVHQKVMKMSNKQEETWLMNRLIKQLTDMGFPREP
AEEALKSNSLNLDQAMGALLEKKGEMDKRGMGMSDYNGMISKPLGCRPPPVSKESSMDRP
TFFDKDGGLVEESPTSPFLPSPSLKLPLSNSAHSNQALGVIASGLGMQNLNSSRQSGNLG
MFGNSGAAQARTMQQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNMGLNPALL
ASPINPQHMTMLNQLYQLQLAYQRLLFQQQMLQAQRNVSGTIRQQEQQVARTINNMQQQI
QQHQRQLTQALLMKQQPPHPPLHPSAGKPTIDNLSHHPPPSLSDLQTKEQQISPNSFSGY
PLAGLIPNMNVSNMELSGGLSMKDSSQSKSRLRQWTHPNSLETLSSNSSLLDQNQSKHGA
IPGGLNIGPPSKPSLEDPYSPYDLITSSESPASPPVAVSDSWTRAKSPADKISNGSNINW
PPEFRPGEPWKGLQNIDPETDPNVTPGSVPSGPSINTTIRDVDRYLLRDRSGGSSPTSSQ
NATLPSSSAWSFSASGYTSSFSSSASSPNTAAKLTDKSTWSPGPITQSQASLSHELWKVP
LGSKNTRPPPGLTNTKPSPSWGVNSLGLVSSWPSSYSSNSAWSTDSSGRNNSWLVLRNLT
PQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAE
FASDEEVNRFFAQAQSLTQTSSWQSNTGNNQSRLGSTNNSHGLVRNDLGHWNTTALSGKG
NSDLLWSGVPQYSSSLWGPPNGDDGRVMGSPTPINTLLPVDLLSGESM
NT seq
6087 nt
NT seq
+upstream
nt +downstream
nt
atgcgactgcacttaatgactgagatggaagagatttcacctgatctaaggaaaaagccc
aaagacgtaaaggaatatgctgagaagacaagacagctaaaattaaatgcatatcaaagc
gacgcatggcaaaaagctgtcttcgaagggagagatagcagagaatctgaatttaaagcc
gcaaaagagcctcaggaagaaattaaaagtgagaaagaaccagaaactaaagaagaggac
catttgatggaagaaaagaaaaagaaaaagcaagaagacaagaaaaagaaggaagctgct
cagaaaaaggttgctgaacagaaaaccaaagtgccagaatctaccaagaccaatcaaaac
cagccacagcctgccaattccagcaacagcctttccaccaccactattaccaacagcagt
ggaagcaatggcaagcgagcttctgttaatagtcaacaacaggctttgtcccgttacccg
cctcgtgaggtgccacctcgcttccggcatcaagaacagaagcagctgttgaaaaggggt
cagccactgccacctgggactgccatcagcaatagtttaggacaagtggtagcaaattct
tctcagcacaacgtacagcaagcagctagtgggcagcagcaacatctaagcaaaggacaa
actgatcacagctacagtggtctgggacctcattatgaaaattcccaatggggacagtcc
cccttcagaagtgaaccaaacagcatctgggataaagtgataatagacgggagtgacaaa
gaagcttggccttctatttctggaaccgagactgaaactgcctcagaatgcacagacact
gactctgcctctaactgtggctcagagaatagtagcatggctacagggagtgcaccaggc
aacttcaatggacaaaacaaaaattgcaataatgatggtaatggagcacttgtccaaagc
agttcaaaccagagtgccattggaggtggagcaaatggtggaaatggaaattcatccagg
gtgtggggtgttgccccaggctctgcccctggtataggtcactgctctgctaccattgga
agtggaaagatggatagtatcattagtgtaaatccaaactgctggggcacttctacatct
actgctagcattaacctcaatcttaatcccaatgccaatccatctgcctggcctgttgtt
gggcatgaaattcaaggaactgtaggaggaggaatcacttccagtgtttgcagtccaaat
attcccattggtcaaaatcttggaaacccaaatagtaaccctaataatggtccaacaggt
agcctgaatacctggggaactttgctgcagcaggagaacacagatacacaaacgcccact
tcacagaatgtgtctttcagcgtacaacctcagaaccttaacactgatggaccaaataac
actaaccccataaactcttcaccaaaccctctcaatgcaatgcaggcgaatggactgcca
aatgtagctgtacaaggaggctgggcaatgactgtaggcatgggtgcaataaacccatcc
catttgcaaaaccttcctattgctaatggggcatctgcagtttctcaactcaatggaggc
agtggtgaagggataaacaatccttcatgcaactcagtgtggggactaccacactctaat
cctacaaccaccaatggtaactcggggttcagtcaggggaatggagacactgtgaattcc
gtattaagtttaagtgctaaacaggcattagcaagtaattccaacagtgctgtacaaaag
gatgttggaaacagtgcttgggactctggtcctcctaccagtcctggggtagtgtcatgg
acaagacctggtaccgttgggggattgcactctggtcccaatagcattggagcttggggt
agcccatcatcgagcaggaacactagtaatggtgtaaatggggaatggggcaagcctctt
aaccagcattccaataatgaagcgaatggcaatgggaaaggatcatcatctggatgggat
ggcctttgtattaccaaccaaactcctgttatgcagcaaggtaatgaacaaattaattct
tgggccaaaccttctgcttcaggtaccactgctagtgaaggaagtactgagagtggtggt
agcaaccatgatggaagtactggaagaggtagtggaggaggtcaaggtggtggccgacaa
aggatggataaagggatgaatgatcaacaagggctgctcaagaatgttgtcccaaggcca
gatctggatcccagagtcttgtgtaatactggatggggacagaccccagtaaagcagaat
atgggctggggagttgaagaagccccaagggttgagcgaaaaaatgatattggaaccgag
gcctggggttcagctgctgcccagttttcaaactcagggggaaaaagtgatgggtccacc
atgaacagtactaatacctcttcagtatctgggtggggaaatcctccacctccagtcatg
tctaataacacaggttggggagataaaacatctaatggccaagggggatggggggattct
gctaattctactgctgttactgctgctgccaaaagtggccatgcctgggctggggtctcc
aatcaggaggagaagccatcaagctgggcagactctcagaaatctaaacctcataattgg
ggagaagggcagaaaaatacccaaggctggacatcaggaggaggcgattggactgattct
gctgtaggaccaggacctttaggtgaagggaaaaaacccaattccagttgggacaatgat
aacagaactggatccaattggaatgaaacaaccaggtcacagaccagtggttgggggaat
ggtaccaatggcaagcctggcccaaatgcaggctggggagagccatcaaaatcgaatgca
ccacaaaactggggtaataaacctcatgataataatgctagctcctggggaggagctaca
actgttaaacagtctggttcaggttgggctggaggacctttgtctgcaaagcagaaagac
agtgaatccaccggctgggaagagccatccccaccatctattcgccgcaaaatggaaatt
gatgatggtacctcagcttggggagatccaagcaattatgtgaagaagactgtaaacctg
tgggatagaaacaatcctgtgattcatagcagtaacaataatgtggctgaacaaccacca
cctcagcctcatcaatcaagtgccgtgcaaaacagatctcctctacttggttcaggttgg
ggagaaacgcttagcgttcctgctaaagctgagacttcttggggagaaccaccctctcca
gctaccacggttgacaatgggacttcagcatggggcaaacctcccaacaacaattcaact
tggggagatcattctgcggagtcgacagggaactttggaagagggaatgtaccaactgct
gtcccaccaatgtgcaaaccagcctccaaatctatgcaagaaggttgggtcagcagtgga
gatgaaatgggcctgagcagcaatcatcacccaagctgggaggaagacgagggggagatg
gggatgtggaataacacagctcctcaggagagtaattcttcctgtaattcctcaggctgg
ggcagtgctaacaagaaagtacatcaaaaggttatgaaaatgtccaataagcaagaagag
acttggctcatgaaccggctgataaaacaactgactgatatgggcttccctagagaacca
gcagaagaggccctgaaaagtaacagcctgaatcttgatcaggctatgggtgctctgttg
gaaaaaaaaggggagatggacaaacgtggaatgggaatgtctgattacaatggaatgatt
tctaagccgctcggctgccgaccacctcctgtctccaaagagtcttccatggaccgcccc
accttttttgacaaggatggcggcctagtggaagagtcccctacttcaccatttttgcct
tcaccaagcctgaagctccccctttcaaacagtgcacactctaatcaggcccttggtgtc
attgcctcggggctgggcatgcaaaacttgaattcttctagacagagtggcaatctaggt
atgtttggcaatagtggagcagcacaagccaggaccatgcagcagcagccaccagtgcaa
cctcttaactcatcccagcctagtcttcgtgctcaagtgcctcagtttctatcccctcag
gttcaagcacagctcttgcagtttgcagcaaaaaacatgggtctcaaccctgcactatta
gcctcgccaattaatcctcagcatatgactatgttaaatcaactctatcagctgcagctg
gcctaccagcgtttactcttccagcagcagatgttacaggcccaacgcaatgtttccgga
accatcagacaacaagagcagcaagttgcacgtacaatcaacaacatgcagcagcagatc
cagcagcaccagcgccagctgacccaggccttgcttatgaagcagcagccaccacatcca
ccattacatccatctgcaggcaaaccaaccattgataacctgagtcaccacccgcccccc
agcctttccgacctgcagaccaaagaacaacaaatatcacccaattctttctctggatat
cccctggctggattgatcccaaatatgaatgtaagtaacatggagctaagcggtggtcta
tcaatgaaggattcatctcagtccaaatcccgtctaagacagtggacccacccaaactca
ttagaaactttaagcagcaattcttcactactggaccagaaccagagcaagcatggtgct
atccctggaggtctcaatattggtccaccaagcaagccctcccttgaggatccctacagt
ccatatgacctgataaccagcagtgagtcaccagccagtccaccggtagcagtcagtgat
agctggacacgtgccaaatcccctgctgataagatctcaaatggctccaacattaactgg
ccaccagagtttcgtcctggggagccatggaaaggactacagaatatcgaccctgagact
gaccctaatgttacacctggtagtgtccccagtggaccttccattaatactactatccga
gatgtggatcgctacctgctcagggacaggagtggagggtcatccccaacatcatctcag
aacgccacgctgccttcatctagtgcctggtccttcagtgcctctggctacactagctct
ttcagcagctctgcatcttcacctaatactgcagctaaattgacagataaatccacttgg
tcacctgggcccatcacccaatctcaagcatcactatcgcacgaattgtggaaagtgccg
ctaggatccaaaaacactaggcctccgccaggtctaaccaacaccaagccatcaccatcc
tggggtgtcaattcattaggacttgtctcaagctggccaagctcttattcctccaattct
gcttggagcactgacagctcaggaaggaacaatagctggctggttctccgaaatcttaca
ccccagattgacggttcaaccctgcggactttgtgcatgcagcatggtccattgattaca
ttccacctgaacttgacccaaggaaatgctgtggttcgctacagttccaaggaagaagca
gctaaggcccagaaatcgctgcacatgtgcgttctgggaaacactaccattctcgctgaa
tttgccagtgatgaggaagttaaccgtttctttgcacaagctcaatcactgacacagacc
tcgagctggcagtccaatacaggaaacaatcagagccgacttgggtcaaccaacaactcc
catggattggttcgcaatgatctgggtcactggaatactacagccctgagtgggaaagga
aacagcgacttgctgtggagcggtgtcccccagtactccagcagtttgtggggacctcct
aatggcgatgacggcagagtaatgggcagcccgactcctataaacaccttactccctgtt
gaccttctcagtggagagtcaatgtaa
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integrated database retrieval system
