Callorhinchus milii (elephant shark): 103175604
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Entry
103175604 CDS
T03088
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103175604 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmk03041
]
103175604 (ddx5)
03009 Ribosome biogenesis [BR:
cmk03009
]
103175604 (ddx5)
Enzymes [BR:
cmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103175604 (ddx5)
Spliceosome [BR:
cmk03041
]
Complex A
U1 snRNP components
U1 related factors
103175604 (ddx5)
Complex B
103175604 (ddx5)
Ribosome biogenesis [BR:
cmk03009
]
Eukaryotic type
Pre-60S particles
Helicases
103175604 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
BNIP2
Motif
Other DBs
NCBI-GeneID:
103175604
NCBI-ProteinID:
XP_007886913
UniProt:
A0A4W3K0Q5
LinkDB
All DBs
Position
Unknown
AA seq
643 aa
AA seq
DB search
MPGYGNDRGDRGRDRGGFGGPRFGGSRNAPPPGKKFGQPGEKLRKRKWDLEELPKFEKNF
YVEHAGVVNRTPQEVEQYRRTKEVTVKGLGCPKPIFNFTEASFPSYVLDVLMQQNFVEPT
AIQAQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQHVANDYGRVSRLKSTCIYGGAPKGPQIRDLERGVEVCIATPGRLIDFLEAGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYV
QINIGALELSANHNILQIVDVCQEFEKDDKLLRLMEEIMSEKENKTIIFVETKRRCDELT
RRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDY
PNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQANDLISVLREANQAINPKLIQMVEDR
GSGRSRGRGGGYKDDRRDDRRDRFSGSRGGGYNGFRNRDSMDRGYGLGKRENGTFSSQTY
NPSGQNSFGAPGSYGTRFGNSSYASLTQGTAAFASQNQNGFKAASNKVQQFGSSGPSSLQ
TNGVGQQLAVGAQYQYAPPPLMGMGFQGQTGYPMPAAYAALQK
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatacgggaacgacagaggggaccgtggccgcgaccgtggcgggttcggcgga
cctcgcttcggtgggagcagaaacgcgcctcctcccggcaagaagttcgggcagccgggg
gagaagctgaggaaacgcaagtgggacctcgaggagctgccgaaattcgagaagaacttc
tacgtggagcacgctggcgtggtgaaccgcacaccgcaagaagttgagcagtacagaaga
accaaggaagtaacagtgaagggacttggttgtcctaagccaatcttcaacttcactgaa
gcaagttttccatcgtatgtattggatgttctaatgcaacagaattttgttgaacccact
gctattcaggctcagggttggccagttgcacttagtggaaaagatatggttggcattgca
cagactggatctggtaaaacacttgcttacttgttgccagccattgttcacataaatcat
cagcctttcctggaacgtggcgatggtcccatttgccttgtcctggcaccaaccagagag
ctggcccagcaagtgcagcatgtggcaaatgattacggcagagtctcgcgtctaaaatcc
acttgtatttatggaggagctccgaaaggcccacagattcgggaccttgaaagaggtgtg
gaagtctgtattgcaacccctggccgactaatagacttcctggaagctggcaagaccaat
ctaaggagatgcacatacctagtactcgatgaggcagacagaatgcttgacatgggcttt
gaaccacagatcaggaaaattgttgaccaaattaggccggatcgacagaccttgatgtgg
agtgcaacctggcccaaagaagttagacaactggctgaagacttcctgaaggaatatgtg
caaattaacattggggcattagaacttagtgccaatcacaacatcctgcaaatagttgat
gtatgccaagagtttgagaaggatgacaagttgctgaggttaatggaagaaataatgagt
gaaaaggaaaacaaaaccataatctttgtggagaccaagcggcgatgtgatgaacttacc
aggcgaatgaggagagatgggtggccagcgatgtgtattcatggtgacaagagtcaacca
gagcgtgactgggttctcaatgaattccggtcgggcaaagcaccaatccttattgctact
gatgttgcatccagaggtttagatgtggaagatgtgaaatttgtcatcaattatgactac
cctaactcgtctgaagactatatccaccgcattggacgaactgcccggagttccaaaacg
ggcacagcttatacgttctttactcctggcaacataaagcaagcaaacgaccttatctct
gtgcttcgtgaggctaatcaggctatcaacccaaaactaatccagatggtagaagacaga
ggttcaggtcgttccaggggtaggggtggtggctataaagatgatcgccgcgatgacaga
agagacagattctctggttccaggggtgggggttataatggttttagaaatagggacagc
atggacaggggttatggactaggaaagcgggagaatgggacctttagttcacaaacttac
aacccgtctggtcagaattcctttggtgcacctggaagctatggaactcggtttggaaat
tctagctacgcatctttgacccagggaactgcagcatttgccagtcaaaatcagaatggc
ttcaaggcagccagtaataaagttcagcaatttggaagttctggtcctagctccctgcaa
accaatggtgtgggtcagcagctggccgtgggagcacagtatcaatatgcgcccccacca
ttgatggggatgggttttcaggggcagactggatatcccatgccagcagcatatgcagca
ttgcagaagtaa
DBGET
integrated database retrieval system
