Callorhinchus milii (elephant shark): 103175881
Help
Entry
103175881 CDS
T03088
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cmk00536
]
103175881
Glycosaminoglycan binding proteins [BR:
cmk00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103175881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103175881
NCBI-ProteinID:
XP_042197237
LinkDB
All DBs
Position
Unknown
AA seq
677 aa
AA seq
DB search
MVPGPVPGPRVEAGGGGGGCRARWCPPAGLWALLSAASATLCICLSVRTSGLERRISALE
TAEGPALPVGRIPAPAAEQMRRMVRERVEQLVEQGSYQDVVKRRFARETSPECNCPPGPP
GKRGRRGRNGEPGPPGPPGPKGDKGDQGDQGPRGLPGSPTVAALHSNQILTVKGDQGQVG
SPGPPGPPGPPGPRGPPGDTGKDGPRGMPGVSGELGARGEKGLMGPKGPPGQKGSIGNTG
VPGFHGQKGDPGVSGEDGEPGQKGDLGEPGQKGDSGHPGLKGDHGEKGDPGSSAAGIKGE
PGHQGQKGEPGLPGLPGLPGIKGEPGFWGPQGEPGLPGLPGTKGEKGDGGPTGRGEIGLP
GFSGPKGEPGEPGISGRSGVKGDHGMNGESGPMGPRGPPGQKGEQGVTEIIDYNGNIHQA
LQRITTLTVTGPPGPQGSPGIQGPKGDMGLTGPSGRDGVQGLRGSKGDIGAPGDKGSIGL
PGLPGINGEKGEKGEKGDRGLPGLQGPSIVGPPGVPGMQGPSGPMGPHGLPGPKGEPGLN
GVKGGKGEPSEKGERGPLGLPGASGLDGQPGPPGMDGPMGPSGPAGPKGDRGEKGVGGDP
GPRGPTGLPGFSGHQGEKGDRGERGEKGLRGNKGEKGEPGQPGLDGLDAPCQLGPDGLPM
PGCWQKGGNPWLIARKK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggtgccggggccggtgccggggccgcgggtggaggcggggggcgggggcgggggctgc
cgtgcccggtggtgcccccccgctgggctctgggctctgctctcggcggcatcggcgacg
ctttgcatctgcctgagcgtgaggacctccgggctggagcgcaggatctccgccctggag
accgcagagggacccgcgctgccggtggggcgcatcccggctccggccgccgagcagatg
aggcggatggtgcgggagagagtggagcaacttgtggagcagggatcctatcaagatgtc
gtgaaacgcaggtttgcgagagagacatcccctgagtgcaactgccctccaggccctcca
ggaaaacgaggcagaaggggaagaaatggtgaacccggccctcctggtcctcctggtcca
aaaggtgacaagggtgatcaaggagaccagggcccacggggtttgccgggctctcccaca
gtggcggctctgcacagtaaccaaatcctcactgtcaagggtgatcaaggtcaagttggg
tcccctggaccaccggggcctccaggtcctcctggcccacgtggacccccaggtgacaca
ggaaaggatggtccccgcggaatgccaggagtatctggagaattgggtgcaagaggtgaa
aaaggcttgatgggacccaagggaccgccaggacaaaagggctctataggaaacactggt
gttccgggctttcatggacaaaagggtgaccctggtgtatcgggggaagatggggagcca
ggacaaaagggtgaccttggagaacctgggcaaaagggagatagtggtcatccaggactg
aaaggtgatcatggcgaaaagggtgatcctggatcttcagcagctggaatcaagggtgaa
cctggacatcaaggacaaaagggtgaaccaggtcttcctgggcttcctggacttcctggg
ataaagggtgaaccaggcttttggggtccacagggagaacctggattacctggattacct
ggcacaaagggggagaaaggagatggaggacccactggaagaggtgaaattggtttaccc
ggattttcaggcccaaagggtgaacccggtgagccaggaatatcaggccggagtggggtt
aagggtgatcatggaatgaatggagaatcaggacccatggggcccagaggtccacctggg
cagaagggtgaacaaggagtcactgagatcatagactacaatggtaatatccatcaagca
ttgcagaggatcaccactctcactgttacgggtccaccagggcctcagggatctccagga
atacaagggccaaagggagacatgggcctaacaggaccatctggacgtgatggagtgcag
ggtcttagagggtcgaaaggtgacattggtgctccaggagacaaaggaagcataggcctc
cccggcttacctggtattaatggagaaaagggagagaaaggggagaaaggagaccgtggg
ttacctggcttacaaggcccttcaattgtaggacctccaggagtccccggaatgcaaggc
ccatcaggtccgatgggcccacatggacttccaggacctaagggtgaaccagggttgaat
ggtgttaaaggagggaagggtgaaccaagtgagaaaggtgaaagaggaccccttggtctc
ccaggcgcatctggcttagatggacagccaggaccgccgggtatggatggtccaatgggt
ccctcaggtccagcaggtccgaagggggatagaggtgaaaagggagtaggtggtgacccg
gggccaaggggccccacaggtttgcccggcttctcaggccatcagggagaaaaaggagat
agaggagaaaggggagaaaagggtctccgaggcaataagggggaaaagggggagccaggt
cagcctggcctggatgggctggatgccccttgccaattgggcccagatggattgccgatg
ccaggttgttggcagaagggaggaaacccctggctcattgctagaaagaaataa
DBGET
integrated database retrieval system