Callorhinchus milii (elephant shark): 103175893
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Entry
103175893 CDS
T03088
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03030
DNA replication
cmk03410
Base excision repair
cmk03420
Nucleotide excision repair
cmk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103175893 (rfc1)
03410 Base excision repair
103175893 (rfc1)
03420 Nucleotide excision repair
103175893 (rfc1)
03430 Mismatch repair
103175893 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmk03032
]
103175893 (rfc1)
03400 DNA repair and recombination proteins [BR:
cmk03400
]
103175893 (rfc1)
DNA replication proteins [BR:
cmk03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
103175893 (rfc1)
DNA repair and recombination proteins [BR:
cmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
103175893 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_7
AAA_30
AAA_14
BRCT_2
AAA_5
nSTAND3
AAA_18
RuvB_N
AAA_33
Rad17
AAA_16
Nexin_C
AAA_19
RNA_helicase
NPHP3_N
AAA_17
Motif
Other DBs
NCBI-GeneID:
103175893
NCBI-ProteinID:
XP_042197369
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MDIRKFFDTIPAGKRSGNETSERKSRAKSGIKVTSDVKKKPREPKGKSSSDDSIAIKPKA
THRKKHIIYDSDSEPELLPPDKKPKKSPSSSKPAKVSKPAIITVVSETDEEDDYQQGSKR
TQKSRENGLSSPRSSIRPGTSGFGKSTVSKSKTKPAHAKLASPMKVTTSVMDYFGTSSVQ
RSNKKLVASKRKAPSGSLDSTMEDEEFAHQLEDDVELERQLHEDEEFARTLAMLDELPKS
KKARTGSEGQELSLSLVVKAKPRKTADEQTEENSGKSLGQSDDHGRRRSDRITLEKSRTA
SQPPPGSSIHREEKLSSKSSPLKTSSKLAFMKRREESSGMKKASTPVEEKIISPKKEEKI
SPAKSVSPEDSEKKRQNYLAYRSYLNRDGPRALGSKEIPQGAENCLENLSFVITGVLESM
ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGRSKLDKAETLGTKQIDEDGLLDLIHK
LPGKKSKYEIAAEAEVKKLKVVSEERNKVSGKSSTRNVKVSTPSKKWSEHQKDGPSTSSP
PTRENGNSLRGVKSISFSAEPFASTSRLKTASASQLSAKEEEASLLWVDKYKPTALKNII
GQQGEQSCANKLLRWLKDWHRNNSGGNKPIAKFHRFGGRDDGSSSKAALLSGPPGVGKTT
TATLVCMNLGFSYVELNASDTRSKNSLKEVVAESLNNTTITGFYYGASSSVSSKHVLIMD
EVDGMAGNEDRGGVQELIALIKQTKIPIICMCNDRNHPKIRSLANYCFDLRFPRPRLEQI
KGAMMTVAYKEGLKIPPPAMNEIILAANQDIRQVLHNITMWCADKKSMTYDQAKKDGKSA
KKDIKLGPFDVVRKVFATGEETARMSLIDKSDLFFYDYSIAPLFVQENYIHVKPVAAGSN
MKKHLMLLSKTAESICDGDLVDKMIRSKQIWTLLPTQAIYASVIPGELMRGYMSQFPSFP
SWLGKYSSTGKHDRITQELTRHMCLRTQTSKRAVNLDYLPYLRDTLVRPLVEEGTNGVRH
AVGTMDAYYLMKEDVDSIMEICSWGGRSDPFAKLDPKVKAAFTRAYNREAHLTPYALQGI
KKSKRGAGPSQDTELETEGVQPEEVVVEEEEAANSMETDPMIKPKKTSKIVKEEKIQPQR
KGGKSKGKGKVTK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggatattcggaaattcttcgataccattcctgccggaaagagaagtgggaatgagacc
tctgaaaggaagagcagagcgaaaagcggaatcaaagtgacatccgatgtgaagaagaaa
cccagggagcccaaggggaagagttcatctgatgactcgatagccataaaaccgaaggca
acgcaccggaagaagcacattatttatgattcagattctgaaccagagttgctgcctcca
gataagaaacctaagaaatccccctcatcatccaagcctgcaaaagtatccaaaccagcg
attatcacagtggtttctgaaactgatgaagaggatgattatcagcaaggcagcaaaaga
actcagaagtcccgtgagaatgggttgtcctctccgagatcaagcatccgtcccggaaca
tctgggtttggcaagtccacagtcagtaaatcgaagaccaaacctgcacatgccaaactc
gccagcccaatgaaggtcaccacctcagtaatggattactttggcacgagcagtgtccag
agatcaaacaagaaactggtggccagcaaacggaaagcgccttcgggcagcctggattca
acaatggaagatgaggagtttgctcaccagcttgaagatgatgtggagcttgagagacaa
ttgcatgaagatgaagagtttgccagaaccttggcgatgttggatgagctgcctaaaagt
aaaaaggcgcggacgggttccgaaggccaggaattatcgttatccttggtggttaaagcc
aaacccagaaaaactgctgatgaacagacagaagaaaactcaggcaagtcgctgggccag
tctgatgaccatggaaggcgccgcagcgaccgcattacgttggagaaatccaggactgct
tcccaacctccacctgggagctccattcacagagaagaaaagctctccagtaaatcgtct
cctctgaaaaccagctctaaacttgcgtttatgaaacgtagggaagaatcgtctgggatg
aagaaggcatcgacgccagtagaagagaaaattatttctccaaagaaagaggagaaaatc
tcaccagcaaaatctgtgagtccagaggacagcgagaagaaacgtcagaattacttggct
tatcgcagctacttgaaccgtgatggacctcgagcgctggggtcaaaagaaatccctcag
ggagctgagaactgtttggagaatctttcattcgtaattactggggtcctggagtcaatg
gagcgcgatgaagccaagtctctaatagagcgatatggagggaaagtgactggaaatgtc
agtaaaaaaaccaattacctggtgatgggccgggatagtggtcgatccaagctggataaa
gcagagacccttggcaccaaacagattgatgaggatggcctgttggatctgatccacaaa
ttgccaggaaagaaatccaagtatgagattgcagctgaagctgaggttaaaaaattgaaa
gtagtttcagaggaaagaaacaaggtatcggggaaaagttccacacgcaatgtgaaggtt
tcaacaccctcaaagaaatggagtgagcatcaaaaagacggcccttcaaccagcagtcct
ccaacacgagagaatggcaactctttgagaggtgtgaagagcatctcgttcagtgcagaa
ccctttgcctctacatcaaggctgaagacagcaagtgcctctcagctgtcagcgaaggag
gaagaagcgagcttgctgtgggtggataagtacaagccaacagccctgaaaaatatcata
ggacaacaaggggaacagagctgtgccaacaagctgctccgctggttgaaggactggcat
aggaacaactctgggggcaacaagcctatagcaaagtttcacaggtttggcggaagggat
gatggttcaagttccaaagctgctctactctctggtcctcctggtgtggggaaaaccacc
acagccactctcgtctgtatgaatttgggattcagctacgttgaactcaacgccagtgac
acccggagcaaaaacagcttgaaggaagtggtagcagagtcactgaacaacaccaccatc
actggcttctactacggagcttcatcctcagtaagcagtaaacatgtgctgatcatggat
gaggtggatggaatggctggcaatgaggaccggggaggagttcaggaactgatcgctcta
attaaacagaccaagattccaatcatctgcatgtgcaatgacaggaaccatcccaagatc
cgctccttggccaattactgctttgacctccgcttcccacgtccccgactggaacagatc
aagggtgccatgatgactgttgcttataaagaaggtttgaagattcctcctccagccatg
aatgaaattatccttgcagccaatcaggatatcagacaggttttgcataatattaccatg
tggtgtgcagataagaaatcaatgacttatgatcaggccaagaaagatggcaaaagtgcc
aagaaagatattaagctgggtccatttgatgttgtgaggaaggtgtttgctaccggtgag
gagactgctcgtatgagcctaatcgacaagtctgacctcttcttctatgactattcaata
gcaccactgtttgttcaggagaactacatccatgtgaagccagtagccgcaggctcaaac
atgaaaaaacacctgatgctgctgagtaaaacggccgaaagcatctgtgatggtgatctg
gtcgataaaatgatccgttcaaagcagatctggactctcctccctactcaggctatttat
gccagtgttattcctggtgagttgatgagaggctacatgtcacagtttccatctttccca
agttggttgggaaaatattcctctactggcaagcatgatcgcatcacacaagaacttacc
aggcacatgtgtctaaggactcaaaccagtaagcgagcagtgaatctggactacctccct
tacctgcgggacacactggttcggccgctggtggaggaaggaaccaatggggttcgtcac
gctgttggaacgatggatgcatattatcttatgaaagaggatgtggacagtatcatggag
atttgcagctgggggggcagatctgatccctttgcaaaattagacccaaaggtcaaagct
gccttcactcgggcctataacagggaggcccacttgacgccctatgcactgcaggggata
aagaaatcaaaacgtggagctggaccttcccaagacacagagcttgagactgagggcgtc
cagccagaggaagtggtggtggaggaggaggaggctgcaaacagtatggaaacagatccc
atgattaagccaaagaaaacatcgaagatcgtaaaggaagaaaaaatacaaccacagcga
aaaggagggaaaagtaaagggaaggggaaggtgacgaagtga
DBGET
integrated database retrieval system
