Callorhinchus milii (elephant shark): 103176248
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Entry
103176248 CDS
T03088
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk04510
Focal adhesion
cmk04512
ECM-receptor interaction
cmk04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103176248
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103176248
09142 Cell motility
04820 Cytoskeleton in muscle cells
103176248
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmk04147
]
103176248
00536 Glycosaminoglycan binding proteins [BR:
cmk00536
]
103176248
Exosome [BR:
cmk04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103176248
Glycosaminoglycan binding proteins [BR:
cmk00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103176248
Hyaluronan
Extracellular matrix or blood plasma proteins
103176248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
103176248
NCBI-ProteinID:
XP_042187960
LinkDB
All DBs
Position
Unknown
AA seq
2301 aa
AA seq
DB search
MIISFGALNMGLLEITAVVFILTANLSVTKSQQSGEVYSDVVFLVDGSRYARPPAFQKVK
NFITQIIDKLNIVENGYRIGLAQYSGDAKTEFLLNRFQQKDEVMNYLRRNYMFKGGGALR
TGRAISHLQTNFFTTAAGSRQVDGVPQIAVVITTARSQDDVEADSKALKKRGVRIISVGI
GNSDISELEKIAFLPNYPFLFQTSGFENLIRASEVSSAIMMITQREFLHKEIKAPAACKS
ANLADIVFLVDQSRSIGERNFQLIRLFLTRFINALDVAGDKIHIGLVQYNTVAFPEFYFT
TYQSKNEMIQHIKKTNYRGGEANTGAALDYIRLNYFTPHAGGRKKQGIPQIAIVITDGKS
KYDVKKAASALRRTGVTVYAVGTKDANQNELSKIASYPSENFVSTIESFGRPSNIERILQ
KRVCVEIINQNSVLPEKVTQLQEGCMETDEADLFFLIHGSDSIKPEDFTDMKQFMLDIIH
KFKIGVDRVRVSVVQYGYAPQTVFSITQYTTNKDVEAAIKRMTLIRELQTVTGKALEFIK
DRFKEIDQSDKNRAQRFLITITDQKSEDDVSIPASELRQRGVVVYSIGVEKADHSEMFQI
AGDLDRMFYTDNYDALTAIKNKVLRDMCSKEACSKLEVADIIFLIDGSRSIYFKDFITMK
VFMETLINKTQVGENRVQFGVIQFSTQTQLEFQLNQYYDKDKLMQAVGDIQQLEGLTSTG
KALNFTAKYFDEAQGGRPHERQYLIVITDGEAQDEVYTPAKAIRDKGITVFAIGVYNANN
SQLVDIAGSQDQVYHVENFDALGSLEKLISFEVCSPLHECKRIEVADIVFVISGSDSIGA
VQLDSMKRFMIAVANRSEVDAKGVQFGVVLYGDSPQTKFQMNEFHSKAGIRTAISQIQKT
TSGSASAAKALKHAAGLLSSEKGGRKSQEVPQFLIVITDTKAADAVDLPAITKGIREDNI
KIYGIGVGRVEQRELEKITGSTEGNFYAQDFGQLQDLSRIISQLLCNGSKLACELSKADI
VFLLDSSESIKKHQFQLEKDFLKDFTDMFEISQDKFQFGVAQYSTNQKAEFYLNQYHDRM
MLNRSIQNIVQLQEGTKTGKALKYIDHFFQPEKGSRKKEGVPQFLLVITDGESQDDVSLP
AEALRRNNIIIFALGIDKVEKKHMVEITGDPQKTYIIKEFTDLSKFKKRLVRTICVTEEQ
KVSPECTMDIAVGFDLPRRSGKQTLFTGQMQLQAKIDEILFMITSITGSSCTADSKADIR
LGFHIKDRNGLNVFETQFENYNQEIVDKLKAIQTDASINLNAETLKSFSNKFNTSDANSK
VVLIFTDGLDDTEVRLNDAAEKLREEGVSALITVTLEGAVNIKKISRIEFGNEFGYKQQL
FIGMQDIGGSLKQEISAIMERDCFNFRCICIGDPGLLGGQGFRGPKGSHGLKGTLGFPGE
EGGMGERGPPGFNGTRGVQGCPGPRGPKGGRGHRGQKGHAGEHGINGINGEQGNHGIPGS
LGEKGYPGNLGKRGPPGTRGERGEQNARGDSGEPGIDSTIQGLKGERGNIGPPGDPGTDG
TPGIRGPVGNPGVEGRRGQSVAQGEKGQRGDRGRKGDPGTRGLPGQPGGSGIPGLRGEQG
HRGIQGPPGIPGPDGEIGNSGVKGPNGLFGDPGKKGERGPRGARGFVGMDGRDGFGFPGL
KGKKGEQGNPGYVGAEGADGKPGITGIEDRKESGRRGNSGDAGDLGDPGSLGGPGRAGPK
GPQGRADQRSCNLISYVRDNCPCCSRTGRGCPAYPTELVFALDVSADVTQAVFLRMKRVV
LTLLQDINIAESNCPTGARVSVVTSNTTVQTSIRFSDFKKKKLLLDKIEQLEHERSTGSR
KIDTVMMFVARNTFKRVRNGVLVRKIAVFITNGDSPDTTAISTAAMILQASNIIPVVISF
SAVPEVLSAFLAQGGEESAVFVLPRQMQSSREMLQNIRLCRLCYDECNPDASCSSAPRSL
TVPLSLDMAFVVDDLEKLNAAESRTVQHFLSSMFDTFLSTSESKDSMPHPRVALVQHTPG
YAPKFGDDPFNLEFGILDYPTKSIKKRHVQDALFKVDGSSSIANTIEWSLNNFFLNAPDQ
KQYKVIFTIFSGETNILDKKKLMQVSREAKCKGFVMFALALGRGTNSTILKNFASFPFEQ
HLLRLDRALEAELGYAQKFALAFLNNLATGINSYPPAALARECRQQIKSQDAIGKPETIP
SFKQYVRVEMAEDIEDGDDINSYDVCALNVDEGNCRNYILKWFFNQELKRCQQFWFSGCR
GNRNRFDTKQECEDLCLKRAW
NT seq
6906 nt
NT seq
+upstream
nt +downstream
nt
atgatcatttcgtttggagctctcaatatgggcctgctggaaataactgcggtggtattc
attctgactgcaaatctgtccgttactaaatcacagcaaagtggtgaagtttattccgat
gtcgtgtttctagttgatggatctcgatatgcgagaccaccagcatttcaaaaagtaaag
aactttattacgcaaatcattgacaagctgaacattgttgagaacggttacagaatcgga
cttgctcaatacagcggggatgccaaaactgaattcctactgaacagatttcaacaaaag
gatgaggtgatgaattaccttaggaggaattacatgttcaagggtggaggagcactaaga
acagggcgtgctatctcacatctgcagactaacttcttcacaacagctgctggaagccgg
caggttgatggagttcctcagattgcagtagtaataactactgcacggtcacaagatgat
gttgaagcagattccaaagcactgaaaaaacgtggtgtaagaatcatctcagttggtata
gggaattcagacataagtgagctggagaagatcgcttttcttcccaattatccatttctg
ttccaaacatctggctttgaaaaccttattcgtgcatccgaagtgtctagcgccatcatg
atgataacacaaagagagtttctgcataaagagatcaaagcaccagcagcatgcaaatct
gcaaacttggctgatatagttttccttgtggatcaatcaagaagcattggagaaagaaac
tttcaactgatccgcttatttctgaccaggtttatcaatgcgctggatgtcgctggtgat
aaaatacatattggtttggttcagtacaacactgttgcatttccagaattttattttacg
acgtatcagtccaagaatgaaatgatccaacacattaaaaaaacaaattacaggggaggg
gaagcaaacactggagctgcacttgattacataaggttgaactactttacaccacatgct
ggtggtcgaaagaagcaaggaattcctcaaattgcaattgtgattactgatggaaagtcc
aagtacgatgtaaaaaaagcagctagtgctcttcgtcgtaccggtgttactgtgtacgct
gtaggaacaaaagacgctaatcaaaatgaactaagcaaaattgcctcatatccttctgaa
aattttgtttcaactatcgagagttttggacgaccatcaaatattgaaaggattctccag
aaaagagtttgtgttgagatcatcaatcaaaattcggtactgcctgagaaagtaacccaa
cttcaggaaggatgcatggaaactgatgaagctgatctatttttcctaatccatggatca
gacagcataaaacccgaggactttacagacatgaagcaattcatgttagatattattcac
aaattcaagatcggtgtggatagggtgcgggttagtgttgtccagtatgggtacgctccc
caaacagttttcagcatcactcaatataccacaaacaaggacgtggaagctgcaattaaa
agaatgactttgatacgagaattgcaaacggtcaccgggaaagcactggaatttatcaag
gatcgcttcaaagaaatagatcagagtgataaaaacagggcacaacgcttcctgatcacc
attacggatcagaaatcagaggatgatgtttcgatacctgcttcagagctgaggcagagg
ggagtagttgtttacagcatcggcgtggagaaagcagatcattctgaaatgtttcagatt
gcaggggacctggacaggatgttttacaccgataactatgatgccttgacagccataaaa
aataaggttttacgggatatgtgttcaaaggaagcctgcagtaagctagaagtggccgat
atcattttcctgattgacggatcgagaagcatttatttcaaagattttatcacaatgaaa
gtgtttatggagaccttgatcaacaaaacccaagttggtgaaaaccgagtccaattcggt
gtgatccaattcagcacacaaacccaattggaattccagctcaaccaatattacgacaaa
gataaactgatgcaagctgttggtgacatccagcaactggaggggctgaccagtacgggc
aaagcactgaacttcacagcaaagtactttgatgaagcacaaggtggacggccccatgag
agacaatacctgatagtgatcacagatggcgaggcgcaggatgaggtttacacacctgcc
aaagccataagagataaaggaattactgtttttgccattggtgtatacaatgctaacaac
agtcagcttgtggacattgcaggctcccaggaccaagtttaccatgtggagaattttgac
gcattgggcagcttagaaaagttaatttcattcgaagtgtgcagtccattgcatgagtgc
aagagaatagaagttgcagacattgtttttgtaataagcggatcagacagcatcggcgct
gttcagctcgacagcatgaagcgcttcatgattgcggtggccaaccgctcagaagttgac
gcgaaaggtgtccaatttggagtcgtgttgtacggggattctcctcaaactaagttccaa
atgaacgagttccatagcaaagctggaatcaggacggcaatttcccaaatacagaaaaca
acaagcgggtctgcgagcgcagcaaaggctctaaaacatgcagcggggctcttatcttca
gaaaagggcggtcggaaatctcaagaagtgccacagttcctgattgtcattactgatacc
aaagctgcggatgcagtagatttgccagctataactaaaggcattagagaagataacatt
aaaatctacggcattggcgttggtcgggtagaacaaagagaacttgagaaaatcacagga
tccacagagggaaacttttacgctcaggactttggccaattgcaagacttatccaggata
atttctcagctgttgtgcaacggatcgaagctagcatgtgagctttcaaaagcagacatt
gtgttcctgctcgacagttcagagagcatcaagaaacatcagttccagttggagaaggat
ttcttaaaagacttcacagacatgttcgaaattagtcaagacaaattccagtttggagtg
gcccagtacagcacaaaccagaaggcagaattctacctcaatcagtatcatgatcgaatg
atgctgaaccgttcaatccagaacatcgtgcaattgcaggagggaaccaaaacaggaaaa
gcgttaaaatatattgatcatttctttcaaccggaaaaagggagtcggaagaaggaaggg
gttccccagtttcttctggtaattacagatggagaatctcaagacgatgttagtcttcca
gctgaagctttgagaagaaacaatatcattatatttgcattgggtattgataaagtggaa
aagaagcacatggtggagattactggagatccacagaaaacatatatcattaaggaattt
actgacttgagcaaatttaaaaaaagattagtgcgtactatttgtgttactgaggaacag
aaagtttcaccagagtgcaccatggacattgctgtggggtttgatctcccaaggaggtca
ggaaaacagaccttattcactggtcagatgcaattacaagcaaagatcgacgagattctg
tttatgatcacttctatcactggcagcagctgtacagctgattcgaaggcggacatcagg
ctgggttttcacataaaagatcgcaatggtctgaatgtttttgaaacacagtttgaaaac
tataaccaagagattgttgataagctgaaagcaattcaaacagacgccagcatcaatcta
aatgcagaaacgttgaaatcattttccaacaaattcaatacatcagatgcaaactcaaag
gtggtgctaatatttacagatggattggacgacactgaagtaagactcaatgacgcagca
gaaaaactccgcgaggaaggagtcagtgcacttatcactgtgactctggagggtgcagtg
aacattaagaagatttcgcgtatcgagtttggaaatgaatttggatacaaacagcagcta
tttattggaatgcaggatattggaggttctttgaagcaagaaatcagtgcaattatggaa
agagactgctttaatttccgttgtatttgcattggagacccgggattgcttggtggtcag
ggatttagggggccaaagggaagccatggactaaaaggaaccctgggctttccgggagaa
gaaggaggaatgggtgagagagggcccccaggtttcaatgggactcgaggagttcaagga
tgcccaggtcccagaggccccaagggaggaagaggacatcgagggcagaagggtcatgcc
ggggagcatggtatcaatggaatcaatggagaacagggcaatcatggaattcctggatcc
ttgggtgaaaaaggctatcctgggaatctgggtaagagaggcccaccaggaactcgcggt
gaacgtggagagcagaatgcacgtggagattcaggtgaacctggaattgatagtactatt
caaggtctaaagggagaacgaggaaacataggcccgccgggtgatccaggaactgatggt
actccaggaatacgtggtcctgtaggaaaccctggagtagagggtcgtagaggacaatcg
gttgcccagggagagaaaggccagcgcggtgacagaggtcgtaaaggtgatccaggaacc
cgaggcctaccggggcaacctggtggttctgggattcctggtcttaggggagagcaagga
catcgtggtattcagggtccaccagggattccaggtcctgatggggagattggcaactct
ggagtcaaaggaccaaatggtctgtttggagatcctggtaaaaaaggtgagagaggacca
agaggagctcgtggatttgtgggcatggatggcagagatggatttggctttcctggatta
aaaggaaaaaagggagaacaaggaaatcctggatatgttggtgctgagggagcggatgga
aaacctggaattactgggatcgaggatcgaaaggaatcagggcgaaggggtaattctggt
gatgccggtgaccttggtgatcctggctctcttggaggtcctggacgagcgggtcccaaa
ggaccacaaggccgagcggatcagagatcatgcaacctcatatcatatgtgcgagataac
tgcccttgctgttcacggacaggaagaggatgtcctgcatatcccaccgagctggtgttt
gctctagacgtgtctgcagatgtcacacaagccgtgtttctaagaatgaagagagtagtt
ttgactcttctgcaggacattaacatcgctgaaagcaattgtccaactggtgcccgcgtg
tctgttgttacatccaacaccacagtacagacttctattagattttcagactttaagaaa
aagaaactgcttctggacaaaatagaacaactagaacacgaacgatctaccggcagtcgg
aagattgacactgtgatgatgtttgtggcaagaaacacttttaagcgtgttcgtaatggt
gtacttgtgaggaaaatagcagtgtttatcactaatggtgattccccagacaccacagcg
atctccacagctgccatgatattacaagcttccaatattattccagttgttatttctttc
agtgcagtcccagaagtactgagtgcttttctggctcaaggtggggaggaatctgcagtg
tttgtcctacccaggcagatgcaatcctccagagaaatgctgcaaaatatccggttatgc
agactctgctatgatgagtgtaacccagatgcctcgtgttcatcagcccctcgatcgctt
actgtaccattaagcctggacatggcttttgttgttgatgacttagaaaaactgaatgct
gcagaatcgaggacagttcagcatttcctgagctcaatgtttgacacgtttctaagtacc
tcagagtcaaaggactctatgcctcatcccagggtggctctggtacaacacacaccaggt
tacgcaccaaaatttggggatgatccgtttaacctggagtttgggattctggattatccc
acaaaatccataaagaagagacacgtccaagacgcattgtttaaggtggacggctcctct
agcattgccaataccattgagtggagcttgaacaactttttcttaaatgctccagatcag
aaacagtacaaggttatttttacaatcttttcaggggaaacaaatattttggacaagaaa
aagttaatgcaagtttcacgggaagccaaatgtaaagggtttgtaatgtttgcattagcc
cttgggaggggaactaatagcacgatcctgaagaattttgctagttttccttttgagcaa
catttacttcgcctggacagagcactggaggctgaactgggatatgcacagaagtttgca
ctggctttcctgaataacctggcaactggaatcaacagttatccacctgcagctctagcg
agggaatgccgccaacaaataaaatctcaagatgcaattggaaaaccagaaacgattcct
agtttcaagcagtatgttcgagtggagatggcagaagatatagaagatggagatgacatc
aatagttatgatgtgtgtgcactgaatgtggatgaaggtaattgcaggaattacattttg
aaatggttctttaatcaagaattaaaaagatgccaacagttttggtttagtggttgtaga
ggaaatcggaaccgatttgacaccaaacaagagtgtgaagatttatgtctgaaacgtgcc
tggtaa
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integrated database retrieval system
