Callorhinchus milii (elephant shark): 103176417
Help
Entry
103176417 CDS
T03088
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103176417 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmk03041
]
103176417 (prpf40a)
Spliceosome [BR:
cmk03041
]
Complex A
U1 snRNP components
U1 related factors
103176417 (prpf40a)
Complex B
103176417 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
DTW
Motif
Other DBs
NCBI-GeneID:
103176417
NCBI-ProteinID:
XP_007888126
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MSTSDAANGPGQQASFQNAPPMIPPPFMGPPGMPPPFPPMGIPPIGQRPPNLPPLPPGMM
PPMIPPMAGPPMGQMPGMMPPMMSGMMMSRMQTASIQASAPPGVSTTATEVTSAPATTVV
QVTNPTVSTVQQVSTATATPVEEQPKKKSIWTEHKSPDGRTYFYNSDTKQSTWEKPDELK
SHAEQLLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELEELEDMIKAEEENGIKEAAT
AATSTQEATSTTTAEVVENEVTTTVDNEKHQMAAVEQSEPEPSNALSHPIEEATKQDIQE
NDIPKKEEEVKKEPVRKTYTWNTKEEAKQAFKELLKEKGVQSNASWEQAMKMIINDPRYS
ALPKLSEKKQAFNAYKIQTEKEEKEEARLRYKEAKENFQRFLENHEKMTSTTRYRKAEQM
FGETEVWTAVPERDRQEIYEDVLFFLAKKEKEQARQLRKRNTQALKNILDNMANVTYCTT
WSEAQQYLMDNPTFAEDEELQNMDKEDALVCFEEHIRALEKEEEEEKQRGLLRERRRQRK
NREAFQAFLDELHESGHLHSMSTWMELYPAISADIRFSKMLGQPGSTPLDLFKFYVEDLK
ARFHDEKKIIKDILKDKGFAVEVNTTFEEFGTVISSDKRAATLDAGNIKLTFNSLLEKAE
AREREREKEEARKLKRKETAFKSMLKQATPPLEPESNWDEVRERFVNESAFEDITVESER
KRLFKEFLQILEHECQHHHSKSKKHSKKSKKHHRKHSRSRSGSETEEDDYHHSKKKKRSH
SKSPSDRSSSEESERSYKKSKKHKKKGKKRRRKSVTPESEGERERERDRDRERDRDRREK
ERSRDDEKERNRNRSQSKHKSPRKATNKDTANWDTSDSELSEGELEKRRRTLLQQLDDDQ
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatcggatgcagcgaatggaccaggacaacaagcgtcttttcaaaatgctcct
ccaatgattccaccaccttttatgggaccgcctggtatgcctccaccttttccacccatg
ggtataccacccattggccagagaccaccaaatctgccacctttgccaccgggtatgatg
ccaccgatgattccgccaatggcagggccgccaatgggacagatgccaggaatgatgcct
ccaatgatgtcaggaatgatgatgtcccgtatgcaaactgcttccatacaagcatcggca
ccgccaggagtcagcaccacggccacagaagtaacttcagctccagcgactactgttgtt
caggttacaaatcctacagtctctactgttcagcaagtttcaacagcaactgcaactcca
gtggaagagcagccaaagaagaaatccatttggactgaacataaatctcctgatggaagg
acctatttctacaattctgacacaaaacagtcaacatgggagaagcctgatgagctgaaa
tcccatgcagagcaattgttatcaaaatgtccgtggaaagagtacaagtctgatactggg
aaaccctattattataactctcaaacaaaagagtctcgatggactaaacccaaagaattg
gaagaactggaagatatgatcaaagctgaggaagaaaatggaataaaggaggctgccact
gcagcaacctctactcaagaggcaacatcaactaccacggcagaggttgtggagaatgaa
gttacaaccaccgttgacaatgaaaagcatcagatggcagctgtggagcagtcagaacct
gaaccctccaatgctctttcccatccgatagaagaagccacaaagcaggatattcaggaa
aatgatattccaaaaaaagaagaggaggtgaagaaagagccagtccggaaaacctataca
tggaacaccaaagaagaggcaaagcaagcgtttaaagaactcttaaaagaaaagggtgtt
cagtcgaatgcatcatgggaacaagcaatgaagatgattataaatgatcccagatatagt
gcattaccaaaacttagtgagaagaaacaagcctttaatgcatataaaatacagactgaa
aaggaggagaaagaagaagccagacttcgatataaagaagctaaggaaaattttcagcgg
tttcttgaaaatcatgaaaaaatgacatctactaccagatataggaaagctgagcagatg
tttggagagactgaggtgtggactgcagttcctgaacgggaccgacaagaaatctacgaa
gatgttttgtttttcctggctaaaaaagaaaaggagcaagcaaggcagttaaggaaaaga
aacacccaagcactgaagaatatacttgacaacatggcaaatgttacttactgcactacg
tggtcagaggcacaacaatatctaatggataacccaacttttgcagaagatgaagaattg
caaaacatggataaagaagatgccctggtttgctttgaagaacatattagagcactggag
aaagaggaggaggaagagaagcagcggggattgcttagagagaggaggagacagcgcaaa
aatagggaggcttttcaagcgtttttagatgagttacatgaaagtggtcatttacattcg
atgtctacctggatggaactgtaccctgctatcagtgctgatattaggttctccaaaatg
ctgggacagcctggatccactcctcttgatctcttcaaattttatgtggaagatctgaaa
gcacgtttccatgatgaaaagaagataataaaggatattttaaaggataaaggttttgcg
gtggaagtcaatactacctttgaggaatttggaaccgtaatcagctcagacaagagagca
gctacacttgatgctggtaacatcaaacttactttcaacagtttgcttgagaaagcagaa
gctcgagaacgtgagagagaaaaggaagaagctaggaaactaaaacgaaaagaaactgct
tttaaaagtatgttaaagcaggcaacacctccgcttgaaccagaatccaactgggatgag
gtgcgtgaaagatttgtaaatgagtctgcttttgaagacattacggtagaatcggaaaga
aaaagacttttcaaagaatttctccaaatccttgagcacgaatgccagcatcatcactca
aaaagcaaaaaacattctaagaagtcgaaaaaacatcacaggaaacattctcgctctcgt
tcaggctcagagaccgaagaagatgattatcaccattctaagaaaaagaaacggtctcat
tcaaagtctccttcggaccgctcatccagtgaagagtcggagcgaagttataaaaaatcc
aaaaagcacaagaaaaaaggcaaaaagagaagacgcaagtctgtgactcctgaatctgaa
ggagagcgagaacgagagcgtgatcgtgaccgggaaagggaccgggatagaagagaaaag
gaacgaagcagggatgatgaaaaagaaagaaatcgaaatagatcacaatcaaaacacaaa
tcacctagaaaggccaccaataaagacacggctaattgggatacctctgacagtgagctc
agtgaaggagaactggaaaaacgaaggagaacactcctgcaacaacttgacgatgatcag
tag
DBGET
integrated database retrieval system
