Callorhinchus milii (elephant shark): 103176524
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Entry
103176524 CDS
T03088
Name
(RefSeq) collagen alpha-1(III) chain isoform X1
KO
K19720
collagen type III alpha
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
103176524
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cmk00536
]
103176524
Glycosaminoglycan binding proteins [BR:
cmk00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103176524
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
103176524
NCBI-ProteinID:
XP_007888321
LinkDB
All DBs
Position
Unknown
AA seq
1458 aa
AA seq
DB search
MPFDLQRDLCLVLDMESFVHTGTFLLLVITQLSLTVAQEEVCSHEGKVFNNRDIWKPEPC
RICVCDTGNILCDEIPCDDVDCPDAEIPFGECCPICPETPTNGIKPKGPKGDPGPAGPPG
RNGYPGPPGPPGLPGLPGGGSSGSGGYGPPVGWDFKGLSGGGGGGAYGIVSQPGLQGPRG
IRGSPGSPGSQGYQGPAGEPGSPGSSGSQGPPGPLGPPGLRGKDGDSGRAGRPGEPGPPG
LTGPHGRPGMSGMPGMKGHRGFDGRNGAKGETGAHGLKGEVGAPGNNGVPGQMGSRGLPG
ERGRAGNPGSSGSRGHDGLPGKDGTAGQDGKPGSPGFPGIAGHKGESGTPGSRGFNGIPG
KMGEPGHQGPSGTPGTPGNRGKDGSPGSRGSMGPSGIPGNPGGPGPIGHPGSSGAVGGPG
PRGLPGESGKPGANGSPGSKGESGATGTPGVPGSSGEEGKAGPPGEKGSSGPNGLPGERG
SPGMNGIPGPGGLPGEKGPAGSIGLPGPSGPKGSSGDSGRPGDPGIPGQRGIQGSPGHAG
KGGLPGPQGLSGERGGPGPDGRPGSRGQPGVMGFPGPRGGDGQSGKNGERGPQGSAGVRG
LPGKSGDIGLPGPSGLSGPTGERGEPGAPGSPGFQGLTGTSGPPGENGKPGDPGPSGTNG
LPGPSGSKGEAGNSGERGVQGLPGPSGLRGFPGSSGPAGSKGPIGPAGPPGSIGASGLQG
MPGERGGPGDQGVKGEKGELGTRGPDGMPGKDGSRGSQGPTGLPGQHGSIGQRGEPGSAG
GPGPVGARGSPGERGEPGSKGPSGFPGTPGLDGQAGPKGSIGNSGPKGNSGSQGLPGPSG
SPGQMGLPGSAGPKGSRGSSGAPGAGGFPGSPGRIGPPGISGSTGSPGPPGISGKIGLPG
SSGKTGKDGSPGSQGIKGVPGDPGERGAPGKDGLVGPSGMVGPLGLIGSRGMPGTRGVMG
LQGSPGLQGLQGEPGKLGSPGSPGERGSTGPIGLPGISGPPGGSGRDGNSGADGVPGRDG
GPGPKGNRGEPGTSGHQGAPGMPGPPGQTGQAGKQGNKGESGNSGSDGRPGSPGPSGHPG
SQGHPGPKGERGQPGGMGIKGHRGIPGGPGLPGPPGSFGELGQPGNPGSQGARGPSGKTG
PPGKDGISGYPGAMGPPGPRGTRGESGTPGPHGEKGIPGFPGSPGPPGPCCGAAISGVPS
GEKGVPYGYYNDQPGDAKKQQDAEVIATLKSLNGRIDAMVSPDGSQKNPARSCRDLKSCH
PEFNSGEYWIDPNQGCKLDAIKVHCNMETGETCMHPNPANIPRKSWWSNRGSHEMKHVWF
GESMDGGFHFSYGDQGVDEDVAEIQMGFLRLLSVRGSQNITYHCKNSIAYLDAEAGNVKK
ALRLMSWSDSELKAEGNSKLKYGILEDGCSKHSGEWGKTVIEFRTRKTIHLPLVDIAPMD
IGAEDQEFGIDIGPVCFL
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgccctttgatttgcagagagacttgtgtttagtattagacatggagagctttgtgcac
acagggaccttcctcctacttgtaataacacagttgtcattaacagtggcacaagaagaa
gtgtgctcacatgaagggaaagtgtttaacaacagagacatctggaaaccagagccgtgc
agaatctgcgtttgcgacactgggaacatcctctgtgacgaaataccgtgtgatgatgta
gactgcccggatgctgagatcccctttggagaatgctgtcctatatgtccagaaactccc
actaatggtattaaacccaaaggaccaaaaggggatccaggtccggccgggccacctgga
agaaatggttatccaggacctcctggtccccctggacttccaggcctacccggcggtggt
agcagcgggtctggtgggtatggtcctccagtaggatgggatttcaaaggcctcagtggt
ggtggtggtggtggggcatatgggatagttagtcaaccgggccttcaaggaccgagaggc
attcgtggatcacctgggtcacctggttctcaaggttatcaaggcccagcaggtgagccc
gggtcacctggctccagtggttcacaaggtcctcctggtccattgggtccacctgggtta
cgaggaaaggatggtgattctgggagagcagggagacctggcgagcctggacctccaggt
cttacaggtccccatggccgaccaggaatgtctggcatgcctggaatgaagggtcacaga
ggttttgatggacgtaatggagctaaaggtgaaactggagctcatggcttgaagggtgaa
gtcggggctcctggaaacaatggtgttcctggccagatgggttctcgtggcctccctggt
gagagaggacgtgctggaaatccaggatcttctggcagtcgtggtcacgatggattacct
ggcaaagatggcacagcaggtcaagatggcaaacctggctcacctggttttccaggaatc
gcaggtcataagggtgagtctggcacaccaggttctcggggatttaatggtattccaggg
aaaatgggagaaccaggacaccagggtccctccggaactccgggtacacctggcaatcgc
ggaaaagatggatcgcctggttccagaggttcaatgggtccttctggtattcctggcaac
cctggtggtccaggtcctattggccacccaggttcctcaggggctgtcggaggtcctgga
cctagaggtttaccgggtgaaagtggcaaacctggagcaaatggcagtcctggttccaag
ggtgaaagtggtgcaactggaactccaggtgtccctggttcttctggagaagaaggtaaa
gcaggtccacctggtgagaaagggtcttctggtccaaatggtcttcctggtgagagggga
tcacctgggatgaatggaattccaggtcccggtggacttcctggtgaaaagggtcctgct
ggaagcattggattacccggtccttctggtcctaaaggtagctctggtgattcaggacgc
cctggagatcctggcatccctgggcaaagaggaatacaaggaagtccaggacacgcagga
aaaggtggtctacctggaccacagggtctatctggtgagaggggtggtccaggtcctgat
ggtagaccaggttcaagaggacaaccaggggtgatggggtttcctggcccaaggggtggt
gatggtcaatctggcaagaatggtgagagaggtcctcagggatcagctggtgtccgaggt
ctaccaggcaaaagtggtgatattggtcttcctggtcccagcggactttcgggaccgact
ggtgaacgaggagagccaggggctccaggttctccaggattccagggtctaactggtact
tcaggtcctcctggtgaaaacggcaagcctggggatccaggtccctctggtacaaatggt
ctcccgggtccatcaggttccaaaggtgaggctggcaattcaggtgaacgtggagtccag
ggtcttccaggaccttcaggattacgaggttttcctggttctagtggaccagcaggatcc
aagggtcccattgggcctgcaggtcctccaggttcaataggagcttcaggattgcaaggt
atgccaggtgaaaggggaggtccaggtgaccaaggtgttaaaggtgaaaaaggagaactt
ggtactagaggtcctgatggcatgcctggcaaagatggtagtagaggttcccaaggtcct
accggtttaccaggacaacatggatccataggacaaagaggtgagcctggctctgctggt
ggtcctggccctgttggtgctcgtggcagtcctggtgaacgaggagaacctggttccaaa
ggacctagtggatttcctgggactccaggtcttgatgggcaggctggcccaaaaggctca
attgggaattctggtccaaaaggtaattccggctctcaaggacttcctggccccagcggg
tctcctggtcaaatgggtcttcctggatcagcgggtccaaaaggcagccgtggctcctcg
ggtgctcctggcgctggtggttttcctggttcacctggtagaattggacctcctggcata
tcaggttccacaggatcacctggacctccaggcatatctggcaaaattggtcttcctggt
tcaagtggcaaaactggcaaggatggtagtcctgggtcacagggtatcaaaggtgtgcct
ggtgatcctggtgaaagaggtgcccctggtaaagatgggcttgtgggtccttctggcatg
gttggtccattggggctgattggatcaagaggtatgccaggaacaagaggtgtaatggga
ctccaaggtagtccagggctgcaaggtttacagggcgaacctggcaaactaggtagtccc
ggtagtcctggtgaacgaggatctactggcccaatcggactccctggtattagcggtccc
cctggtgggagtggaagagatggtaactctggtgctgatggtgttcctgggcgtgatgga
ggtccaggccctaagggtaatcgaggtgagcctggcacttcaggtcaccaaggtgctcca
ggtatgcctggtcccccaggtcagactggccaagctggcaaacaaggcaacaaaggggaa
tcgggtaattcaggctcggatggtcgtccgggttcacctgggccttcaggacatccagga
tctcaaggtcatccaggaccaaagggtgaaagagggcagcctgggggaatgggcatcaaa
ggtcaccgtggaattcctggtggaccaggtctaccagggccacctggttcctttggtgaa
ttaggtcaacctggaaatcctggatctcaaggtgccagaggtccttcaggtaaaactggt
cctcctggtaaagatggcatcagcgggtatcctggcgccatgggtcctcccggtcccagg
ggtacacgaggtgaatctggcactcctgggcctcatggtgaaaaaggtatccctggtttc
cctgggtcacctggtcctcctgggccctgctgtggagcggcaataagtggagtgccttct
ggcgagaagggtgtgccatatgggtattacaacgaccagcccggagatgccaagaagcaa
caggatgcagaggtaatagcgaccctgaaatcactaaacggacggatagatgccatggtg
agccctgacggatcacagaagaatccagcccgaagttgccgtgacctaaaatcctgccac
ccggaatttaacagtggagagtactggattgatcccaaccaaggctgtaaattggacgcc
atcaaggtgcactgcaacatggagactggggagacctgcatgcaccctaaccctgcgaac
atcccacgtaagagctggtggtcaaacagaggcagccatgagatgaagcatgtgtggttt
ggagagtctatggatggcggctttcatttcagctatggtgaccagggcgtggatgaagac
gttgctgaaatccaaatgggattccttcgtctgctttccgttcgaggttcccagaatata
acataccactgtaagaatagcattgcatacctggatgctgaagctggaaatgtcaagaag
gctttaaggctgatgagctggtctgattctgaactcaaggctgaaggaaacagcaaattg
aagtatgggatccttgaagatggatgcagtaagcacagtggagagtggggcaagacagtc
attgagtttagaacacggaagactattcatttgcctcttgtggacattgctcccatggat
atcggtgctgaggaccaggaatttggcattgacattggccctgtctgcttcttgtaa
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