Callorhinchus milii (elephant shark): 103176925
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Entry
103176925 CDS
T03088
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmk04147
]
103176925 (col18a1a)
00535 Proteoglycans [BR:
cmk00535
]
103176925 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
cmk00536
]
103176925 (col18a1a)
Exosome [BR:
cmk04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103176925 (col18a1a)
Proteoglycans [BR:
cmk00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
103176925 (col18a1a)
Glycosaminoglycan binding proteins [BR:
cmk00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103176925 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
103176925
NCBI-ProteinID:
XP_007889000
LinkDB
All DBs
Position
Unknown
AA seq
1887 aa
AA seq
DB search
MILPFKLLVCLVCVSLPPPAQGWWNFWGAVNPTTPVSSSSKTILQSTSPTVTERHSEVHL
TARSFTSEQTTTLASSSGQRVATVPPLMTTGTATATFVPPKAGGGTAKGNIAGVGAEILN
VAEKVQVLLRSWDGTTRSTTGLDVAPTTAAGERATEGSSPLDPETLNNVTEGSPPLDPEI
LNNVTEGSSPLDPETLNNVTEGSSPLDPEILNNVTQGSSPLDPETLNNITESSSPLDPET
LNNVTEGSSPLDPETLNNITESSSPLDPETLNNVTEGSSPLDPETLNNVTEGSSPLDLET
LSNVTELNSTENSSHLDPETPIALAELSSNADQRSIEGTNASTAPVGTLVSSNASVLVTA
ATQPTTEPFTLSILSNSSSSSSSSPSAMPVTPPQPETILKSAANRPCVSLCPGTIVRKAP
VSGASLHGTVAPPGIPDHKRPQTADTRDPLMTDSMHEGSRLGVPGSSVNQLSHNALEPSH
KMSAGTGGNHGNPGRSRSPLGDWRASRFSEHDGIAQDGLNQTNRDPAFNPNATNGRVDSV
SLLQLIGDPPAEHITVLSDADQRPIYKIGPGVNTGQLAISYLSSPLFRDFSLLFNIKPTS
RKGGVLFAVTDASQRVIYVGVKLSEISAGAQNIIFYYTEPGSQSSFQAATFKVLPLINKW
TKIALSVEGEKVVLYLNCEEHSSKQFERSPDALVLDPASGIFVAMAGGADPDKFLGIMAD
LMFISNPWAAERYCEEEEEGDDWEASGDFGSGSSERGKAPGIETVTAPSQHLPDRLPMTP
PPINAERVRPEENSRRTLGSGTERGTPGADLLKGERGEKGEKGSHGSPGPKGDSSSIYST
STAIKGERGEKGEAGEKGSAGFGYRGPKGDKGNSGNRGAPGLPGPPGSPATVVQRGDGIV
MEHVAAHGPPGPPGPAGPPGNDGEPGDPGEDGKAGEVGPQGFPGTAGDQGPRGEKGDRGE
GVPGPRGPPGPPGPPAMDGKTEKLTFLDMEGSGFEGDLQHFRGIPGLPGPPGPPGVPGLP
GKPGEFGMNQTGDHAALGRRGIDGIPGIPGPPGPTGPHGSDGHPGLPGPKGEQGEAGELG
LPGALGMKGSPGAEGPLGQPGLAGLPGPMGPRGPPGPPGPPSTHFTAGFDDMEGSGIPFL
SGIPGERGIEGVQGVTGAPGLPGQPGMKGMPGIQGQPGLPGPPGRNGLQGFMGPQGLKGE
HGDTGMKGEPGRDAVAIPGPPGLPGPPGYMYGGENIIGGHSGVPGPEGPKGIPGQAGFPG
PRGPQGESGTLGPPGQPGMKGDRGEPGYILGPDGSILNSPGVGGFTGPKGDAGIPGPVGP
SGPFGRPGQKGEIGFPGRPGRTGRNGLKGEKGDPGEFNGGFGFRHISGPPGPPGPPGPPG
PPSVGVLPFDNNVFETGAMRQVAIPGAPGSQGERGYPGHKGEKGDLGQPGIAGPPGPSPY
DLYQLGSTLRAEKGDRGDSGQKGEKGAPGEVNTSLLGAQGLPGHLGRPGLPGPKGDSIVG
PPGRPGNPGPPGYSYPGPPGPPGPPGPPGTITSSGGSSLTRIVGPAGPPGPPGPPASSSG
VTVVRTYQMMLSLTRSLQEGSLVYVLERGELYLRVREGWRQVNLGQYIPYPGGNVLENKV
EAVGSPPVVQYGTHSESSTRGGQARIPPPDRRLPPPEQPEHKPPHSHPPRQPEQPHHNQH
IPQRQPTHPTTGHQQPPNKPSTGSRLPHTGPMLHLMALNTPLGGDMRGIRGVDFQCFQQA
RAVGLTGTFRAFLSSKLQDLYSVVRRADRGSLSIVNLKGEVLFDNWNSLFSGSHAHFKSN
VPIYSFDGRDVLRNQAWPEKMVWHGSDAKGHRLSTNYCEAWRAADRAVTGMASALGSHKL
LEQRPLACSSSFIVLCIENSYLPHARK
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atgattttgccgttcaagcttctcgtgtgcctggtgtgtgtcagtctgccacctcccgcc
cagggatggtggaatttctggggagcggtgaaccccaccaccccggtctcctcctcatct
aagactatcctgcaaagcacctcacctaccgtaacggagagacacagtgaggtccatctc
acagcccgttcattcacctcagagcagacgactactctggcaagttccagcgggcaaaga
gtagccacagtgccccctctaatgactaccgggaccgcaaccgctacattcgtccccccc
aaagctgggggaggaactgcgaaggggaacatcgccggggttggcgctgagatactgaac
gtggcagaaaaagtccaggtcctgcttcgctcctgggacggaacaacacgctcaacaact
ggactggatgtggctccgacaactgcggcaggggaaagagcgactgagggctcctcaccc
ctggatcctgagacactcaacaatgttaccgaaggctccccacccctggatcctgagata
ctcaacaatgttaccgaaggctcctcacccctggatcctgagacactcaacaatgttacc
gaaggctcctcacccctggatcctgagatactcaacaatgttacccaaggctcctcaccc
ctggatcctgagacactcaacaatattacggaaagctcctcacccctggatcctgagaca
ctcaacaatgttaccgaaggctcctcacccctggatcctgagacactcaacaatattacc
gaaagctcctcacccctggatcctgagacactcaacaatgttaccgaaggctcctcaccc
ctggatcctgagacactcaacaatgttactgaaggctcctcccccttggatcttgagaca
ctcagtaatgttactgagctaaattcaactgagaactcatcacacctggatcctgagacc
cccatcgctcttgctgagctgagttcaaatgctgaccagaggagtattgaaggcaccaat
gcatccacagcaccagtgggtactttggtttccagcaatgcgtcagtgcttgtgacggct
gcaactcagcctaccacggagcctttcactctctcgatactctccaactcctcctcctcc
tcatcttcatcaccttcggccatgcctgtgactcctccacagccagaaacaattctgaag
tcggcagccaacaggccgtgtgtctctctctgcccaggtaccattgttaggaaggctccg
gtctcgggggcatcgctccatggcactgtggcaccccctgggatacctgaccacaaacgc
ccacagactgcggacactcgggacccactgatgacggacagcatgcatgaaggctcccgg
ttaggagtgccgggctcttcggttaaccagctatcccataatgctctggaacctagccac
aaaatgtcagccgggacaggcggtaaccacggcaacccaggccggagccgatcgccactc
ggagattggagagccagtcgtttctcggagcatgatgggatagcacaagatggtctaaac
caaactaatcgtgacccggcctttaatccgaatgcaactaatggccgtgtcgactctgtg
tcactgctccagttgatcggagaccctcctgccgaacacattaccgtgctgtccgatgcc
gaccaaagaccaatatacaagatcgggccaggggtgaacactggccagctggcgatatcc
tacctatcgagccccttgtttcgggatttctctctcctgttcaacatcaagccgacgtcc
aggaagggtggtgtactcttcgcggtcacggacgccagccagagggtcatttacgtgggg
gtgaagctctcggagatcagcgctggagcacagaacatcatcttctactacacggagccc
gggtctcagtcctcttttcaggccgccacgttcaaggtactgcccctgatcaacaagtgg
accaagattgccctgagtgtggagggcgagaaggtggtgttatacctgaactgcgaggag
cattcaagcaagcaattcgaaaggtctcctgatgccttggtactcgatccggcctctggg
atctttgtggcgatggctgggggagcagatcctgacaagttcctgggtatcatggcagac
ctgatgttcataagtaatccatgggcagcagagcgttattgtgaggaagaggaagaagga
gatgactgggaggcctctggagacttcggaagtggatcctcagagaggggaaaagctcct
ggaatagaaacggtgactgccccctcacagcacctccctgatcgcttgccaatgacaccc
ccgcccatcaacgctgagcgggtcagaccggaggaaaacagccgacgaaccctgggctca
ggaaccgagagaggaactccaggtgctgatttgctgaaaggggagcgtggagagaagggg
gagaagggaagccacggctctcctggtccaaaaggtgacagcagctccatctacagcaca
tcgaccgctatcaaaggggaaaggggtgaaaaaggagaggccggtgaaaagggatccgct
ggatttggctaccgtggacccaaaggggataaaggaaactccgggaaccgaggggccccg
ggcttgcctggcccccctggatctcctgctactgtggtacagcgcggcgatgggatagtg
atggagcacgtggctgcccacggtccgcctggaccaccaggcccagccggccccccgggg
aatgacggcgagccgggggaccctggcgaggatgggaaagcgggtgaggttgggcctcaa
gggttccccggaactgctggtgaccaaggacccaggggtgagaagggtgaccgaggtgag
ggggtgccaggaccaagagggccccccggcccccccggaccaccagccatggatggcaag
acagaaaagctgacatttcttgatatggaaggttctggatttgaaggcgatctacagcac
ttcaggggtatcccagggctcccaggcccgcctgggcctccgggtgttccagggcttcct
ggtaaacctggagagtttggtatgaaccagactggagaccatgcagcactgggccggaga
gggatagatgggatacctgggattccaggacctccggggcccactggtccacatgggagt
gatggccatccgggattaccgggtcctaagggagagcagggcgaggcaggtgagctcggc
ctcccaggagcactggggatgaagggatcccctggagcggaaggcccccttggacagcct
ggcttggcggggttgccaggaccaatgggaccccgaggcccgcctggaccccctggacca
ccatcgacccatttcactgctgggtttgatgacatggaaggatctggaataccattcctg
agtggaattcctggggaaagagggatagaaggagttcagggggttacgggggcacctgga
ttgcctggacaacctggcatgaagggtatgcctgggatccaaggacaaccggggttgcct
ggaccaccgggaaggaatgggctgcaaggatttatgggacctcagggtctaaagggcgaa
catggagacacaggcatgaagggggaaccaggcagggatgcagttgcgatacctggcccg
ccaggactacccggccccccaggatacatgtacggaggtgaaaatataatcggtggccat
tcaggcgtgccagggccagagggtccgaagggtattcctggccaagcgggattcccaggg
cccagaggaccgcaaggagagtctggaaccctagggcctccaggacaaccaggaatgaag
ggtgatcgaggggagcctggctatatccttggccctgatggaagcattctgaacagcccg
ggtgttggcgggttcacagggccaaagggtgacgctgggattcctggacccgtggggcca
tcgggtccctttggacgtcctggtcaaaaaggtgaaattgggtttccaggacggccgggt
cggacaggacggaatggactgaaaggtgaaaagggcgatccgggagagttcaacggtggt
tttggattccggcatatctcaggccccccgggacctccagggcctcctggacccccaggc
ccacctagtgttggagttttaccctttgacaataacgtgtttgagacgggagccatgagg
caagtggcaattcccggagcaccaggatctcaaggagagagaggctatccaggccacaag
ggtgaaaagggtgacttgggtcagcctgggatagcaggccctccaggtcccagcccttat
gacctgtaccagctcggctccacactcagggctgagaaaggcgatcgaggtgactccggg
caaaaaggagaaaaaggagcaccaggggaagtcaacactagtctattgggagcccaggga
ctccctggacacctaggccgcccaggacttccaggaccgaaaggcgacagcatcgttgga
cccccaggacgaccaggcaaccccggccccccgggttatagttatccaggacctcccggg
cccccaggacctcccggacccccaggaaccatcacatcgtccggcgggtcatctcttact
agaatcgtgggaccggccgggcctcccgggccaccaggtccaccggcttcatcctctggg
gttacagtggttcgcacctaccagatgatgctgagcctaacgcggagtctgcaagaaggc
tctctggtctatgtgctggaacggggggagctgtacctccgagtacgggagggatggcga
caggttaacctcggacaatacattccatacccgggagggaatgtgcttgagaacaaagtg
gaggcggtgggttcaccgccggtggtgcagtatggcacacacagcgagtcctcaacccga
ggcgggcaggcgcgtatccccccacctgaccggcgcctacccccacctgagcagccagag
cacaagcccccgcacagccatcctccccggcagccagagcaaccccaccacaaccagcac
attccgcagagacagccaacacaccccaccacaggccaccaacagccacccaacaaaccc
tcgaccggctcccggctcccacacacaggacccatgctgcatctcatggcgttgaacact
cctctgggtggtgacatgcgggggatccgtggtgtggatttccagtgttttcagcaggct
cgggccgtggggctgaccggcaccttcagagctttcctctcctctaagctgcaggacctg
tacagtgtggtgaggcgtgccgacagaggttccctgtccatcgtcaacctcaagggtgag
gtgctgttcgataactggaactccctcttctctggatcccatgctcatttcaagtccaac
gtgcccatctattccttcgacgggcgggatgtgctgcgaaaccaagcctggcctgagaag
atggtgtggcacggctctgacgccaagggtcaccgcctgtccaccaattactgtgaggcc
tggagagccgcggatagggccgtcacgggcatggcatccgcactcggcagccacaagctc
ctggagcagcgtccgctggcctgcagcagctccttcattgtcctctgcatcgaaaacagc
tacctgccacacgcccgcaaataa
DBGET
integrated database retrieval system
