Callorhinchus milii (elephant shark): 103177741
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Entry
103177741 CDS
T03088
Symbol
frem1a
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103177741 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
cmk04091
]
103177741 (frem1a)
Lectins [BR:
cmk04091
]
C-Type lectins
Lecticans
103177741 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
103177741
NCBI-ProteinID:
XP_042188272
LinkDB
All DBs
Position
Unknown
AA seq
2172 aa
AA seq
DB search
MKHYWEQQTLGFLLLLCLWKCTGSSFVEVNRGMRVPKGQSVFLAEEDLQFKIPKEKDACK
LEVVINEPITQRVGKLTPQVFDCHFLPNEVKYTHNGCPILNKDQVMLRLYRFTETETFTE
TFILSIQLLESDCNIIRLGSTPLEVPEFYDLSNSIDRNVLTFHYDKSMNLNCTVRVATSE
TLLPGYGELVIGKLPRGEVWGDQPHSFVRIRQKSKWRLGSSHEDLKQIHTFKVSCDEFLM
MGLRYHHLSPPSPDVDYIAIGLELVDSRSKNVHKTENIWIPVRIRNAFPNQPPKATFMAM
FILEVDQFILTSLTTGXLDGEDSETPKAQLVFNVTRPPPQGYITHLSDHTKPITSFTWSD
LNELLIAYQPPNSSHTERRNYEVEFEVHDFYFRNSAPILVHISIRTADTNSPRVSWNMGL
NLLEGQSRLITWEQLQIVDNDDLSAVRLITVEGLQHGRLTVRDGKGFIFTVSDIKAGAVR
YHHDDSDTTKDFITFRIFDGHHSTRHKFPINILPKDDSPPFLINNVIFELCEGQTILIER
FMLQASDMDSSDDYILFKITKSPEAGEIMKKTAPGITGYPVNRFLQRDLFNAVIHYRHLG
GEVFEDSFEFILSDSHDPPNLSEPQTVIVHITPVDDQLPKEVPGTVRQLVVKETETSCLT
KKQLHFTDTESPDRELIYTITTLPFFTSTVGLPDAGKLFLTDSMNKLNKDASVPMLRSFT
QHAVNYLKVAYMPPVQDIGPDSQHLQFHFSVSNQHGGTLIGLCFNITVLPVDNQAPEIYT
NLLRVEEGATSQITAHHLLVTDIDTKEENIRVLLQRKPMNGEVEVDGVIMIEGDMFTLKD
LKKTKVSYRHDDSETLQDKIIFSATDGFNSAECVLEVQVLPVNDKPPEMKPGLNPMLYCL
EGEHITITTEYLYAADMDSDDSKLMFMIVRQPLYGIVRKNSQIVDRFTQADVIAGTVTYS
HISGEVGLNPCFDTITFVVSDWDAGTVGGCCYEEPVSPPRSLHDSLPVYDLNITVMPINN
QPPTIKIGPMFVVDEGSTACITLSHLDASDQDTPLEALTFVLVSPPQFGFIENTLPSPGY
EKSNTGISIGSFALKHVKDSYINYVQSRHQRIEPTADQFMLYVTDGEHRSREKPFYVVIH
PTNDEIPDFLARNITVPEGQMCELGPSIINVVDFDVPPDNLMFTVTQQPQHGMMVNGVFG
KDVNRYSHRHQELPVRDFTMDQLKHGMKLMYMHDDSETTADSFTVQLSDGKHKIRKAISV
QVLPINDQKPLLIRNNGLEMEMGETRILSSVVLVAEDKDTPREHVYYMIQSAPKQGVLQL
KVGNNWIPLNPAMNWSQDDLDMNLVRYVHTGALGSKDQDRFSFHLSDGDNRSPVHHFYVT
IRNMEKGEIAVFLKPLALAKGGRGILTTAELLAADGTDKPEELLYVITAPAKYGQVEYIG
HPGLVITSFTQMDVAAQTVCYTHSSKADVTRDSFRFIVSNGLSSRNGSFEIIIENADRTL
PTLSKNQGIHLVEGSMIVIAPEVLHLSDPDTPSRNLTYIIAQHPQYGQLYLRGTVLQQDN
FTQLDIDNMDVAYKHGGGDSQIDRFTFIVSDRSNQGFLVNGKMQTEPATFTIEVDYVDKA
APRIIYLRCPSKVDVLKNGRYGIYISSRSLKASDIDSKDEEIIFRILSPPLFGYLENVTS
GGFIHNTFTQRDLNSKTILYIINPSVEVTSDTLEFQVSDRTGNSAIPQILELKWSRIEMA
LSEYQVCEDGGTLSVKVVRTGYSMESSFIGIKVNDISARAGKDFTHSSANLIQFDPGVSV
KGWNIVILRDALEEEKETFEVLLESPVNAVLGAKTKALVKVIDTRGGRCRNEEHSPVFRD
GINPAFRSLTHRVHGSVRVEEIPNSQPRAEGNQSRGDVPQELPSQRTSKSRLRAIGNGRM
IRPSSTYRNGTDLIFTYHGLMSLRVEDDTAPFTSNKRAKVLVTSRGQQHFPGEPELPQAD
KAAATQQSRILTGKQAYSAAAFTKRCTPELQGLLYFDQSAQKLLRCDGIAWKPWNPTTEE
ISAKKCPPGWSYHENHCYYLSSEHKATWTGAARACKEMHQGSLVSVHSKQDMTWLWDFSG
RRPFWIGLNDRMSLGKWEWAGGDPVVFTNWKRGPPHTTKKKGKNCVLVRRRGKWQVKNCK
RGKPHHYMCSVH
NT seq
6519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcattactgggagcagcagacacttgggttcttattgctgttgtgcctttggaaa
tgtactggatcttcattcgtggaagtgaatcgtggcatgagagtgccgaaggggcagtct
gtgttcctggcagaggaggacctgcaattcaagatccccaaggagaaagatgcctgcaag
ctggaggtagtcatcaatgaacctattacacagcgagtggggaagctgacacctcaggtc
ttcgattgccatttccttcccaatgaggtgaaatacacccacaatggctgtcccatcctg
aacaaggaccaagtcatgctcagactttacaggtttacagagacggaaaccttcactgaa
acattcattctcagcattcagctactggagtctgactgcaacatcatccgcctgggttca
acaccactggaggtccctgagttttacgatttatccaactccatcgataggaacgtactt
acattccattacgacaagtcaatgaatcttaactgcaccgtacgagtggccacttcagaa
actcttcttccaggatatggagagcttgtaataggaaagctgccaagaggagaggtctgg
ggtgaccagccacacagctttgtacggatcaggcagaagtctaaatggagactaggatca
agccacgaggacctcaagcagattcatacattcaaagtgagctgtgacgaattccttatg
atgggacttcgctaccaccacctcagtcccccttctcctgatgtagactacattgcaatt
ggcttggaacttgttgacagcagaagcaaaaatgtgcacaagacagagaatatttggatc
ccagtcagaatcaggaatgcttttcccaaccaacccccaaaggccactttcatggctatg
ttcatcctggaggtggatcagtttatcctgacttccttgacaacggggnacctggatggt
gaggatagcgagacccctaaggcccagcttgtgttcaatgtaaccagaccacctccgcag
ggctacatcactcacttgtccgaccacaccaagccaatcacgtcattcacctggagcgac
ctgaatgagctgctcatagcatatcagcccccaaacagcagtcacactgagagaaggaac
tacgaggtagagttcgaagttcacgacttctacttcaggaacagtgcaccaattttggtg
catatctcaataaggacggctgataccaactctcccagagtatcctggaacatgggactt
aatctactggaaggccagtcccgattgattacctgggagcagctccagatcgtggacaat
gatgacctcagtgctgtccgtctgatcactgtggagggcctgcagcatggacgacttaca
gtaagagatggaaaaggtttcatttttactgtcagcgacatcaaggctggtgccgttcgg
tatcatcatgacgacagtgataccacaaaggatttcataactttccgaatttttgatggt
catcatagtacccggcacaaattcccaattaatatcttgccgaaagatgacagtcctcca
ttcctcatcaacaacgttatctttgagctgtgtgaaggccaaacaattctgatcgagaga
tttatgcttcaggcctcggacatggactccagtgatgactacattctcttcaaaatcacc
aaatcccctgaagctggagaaatcatgaagaaaacagctcccggaatcacaggttatcct
gtcaaccggttcctgcagagggatctctttaatgctgtgatccactaccgtcacctagga
ggagaggtgtttgaagactcctttgagttcattctatctgacagccacgacccaccgaac
ctctcagaaccccagacggtaattgtgcacataacccctgtggatgaccagctacccaaa
gaagtacctggcactgttcggcaactcgttgtcaaggaaaccgagacatcatgcctgaca
aagaagcagctgcacttcacagacacagaatcccctgacagagagctgatatatacaata
acaactctgccattctttacctccactgtgggcttgcctgatgcagggaaattgtttctg
acagacagcatgaacaaactgaacaaagatgccagtgtcccaatgctgaggtccttcaca
cagcatgctgtcaactacctgaaagtagcctacatgcctcctgttcaggatataggaccc
gactcacagcaccttcagtttcacttctcagtcagcaatcaacatggtggaactttaatt
ggcctctgcttcaatatcacagttcttcctgttgacaaccaagcaccagagatctacaca
aacctgctgagagtggaggagggtgccacatctcaaattaccgcgcatcacttgctggta
actgatattgataccaaagaggagaatatcagggtgctgctacagaggaaaccaatgaac
ggagaggttgaagtggatggagtcatcatgattgaaggggatatgttcaccttgaaagat
ctcaagaaaactaaagttagttacaggcatgatgattctgagaccctgcaagacaaaatc
atcttttccgctacagatggattcaactcagctgaatgtgttttggaggtgcaggtgttg
ccagtgaatgacaagcctccagagatgaagccaggactgaaccccatgttatactgcctt
gaaggagagcacattaccattaccacagaatacctctacgctgctgatatggatagcgat
gactccaaacttatgttcatgattgtgcggcaaccactgtatgggattgtgcgcaaaaac
agccaaatcgtcgatcgctttactcaagctgatgttatcgccggcacagtcacatacagc
cacattagtggggaggtcggtttgaatccctgctttgacaccatcacttttgttgtctcg
gactgggatgcaggcacagtgggaggctgttgctatgaggagcctgtttcccccccaaga
tctctgcatgactctctccccgtgtatgacctcaacatcacagtcatgcccatcaacaac
cagccgccgaccattaagatcggtccaatgtttgtcgttgatgagggctccactgcatgc
atcacactttcccacctcgatgccagtgaccaggatactccgctggaggcactgactttt
gttctggtgtcacctccccagtttggcttcattgagaacactctgccttcaccgggctat
gagaaaagcaacaccggtatcagtataggttcatttgctctgaaacatgtgaaggattct
tatataaactatgttcagtctcgacaccagaggattgagcctaccgcagatcagttcatg
ctgtatgttactgatggggagcaccggtccagagagaagccattttatgttgtaattcac
cctacaaatgacgagataccagattttcttgccaggaatatcactgtacccgaaggtcaa
atgtgcgaattgggtccatcaataatcaacgtggtggacttcgatgtgcccccggacaac
ctgatgttcactgtgacccagcagccacagcacgggatgatggtgaatggagtgtttggg
aaagatgttaatcgatacagtcaccggcaccaggaactccctgtccgtgacttcacgatg
gatcagctgaagcatggaatgaaactgatgtatatgcatgatgactctgaaactacagcc
gatagcttcacagtgcagttgtcagatggcaagcacaagatccgcaaagccatttcagtc
caagtccttccaatcaatgaccagaagcctttactcatcaggaataacggccttgagatg
gagatgggggaaacacgaatcctttccagtgttgtgctcgtggctgaagacaaggacacc
cccagggagcatgtttattacatgatacaaagtgcccctaaacaaggagtgcttcagctc
aaggtgggcaacaattggatacctctgaatccagcaatgaactggagtcaggacgacctg
gacatgaatctagtgagatacgtacacactggagcactgggttcaaaggaccaggacagg
tttagtttccatctgtcagacggtgataaccggtcaccagtgcatcatttttatgtcacc
attaggaacatggaaaaaggtgaaattgcagtgtttctcaaaccacttgcccttgccaag
ggaggccgaggcattctgactacagccgaactccttgctgccgatggcactgataaaccc
gaagagctgctatatgtaataacagccccggcaaaatatggacaagtggaatacatcggt
caccctggattagtaataaccagcttcacccagatggacgtagcggctcagacagtctgt
tacactcacagcagcaaggcggatgtcacaagagattcattccgattcattgtcagcaat
gggctgtccagcagaaacggaagctttgagatcatcattgaaaacgctgatcgtaccttg
cccaccctatcgaaaaaccaggggatccatttggttgaaggttccatgattgtcattgcc
ccagaagtgctacatctgtctgatcctgatactccatccaggaatctgacctacatcata
gcacagcatccacagtatgggcagctctatctcagagggaccgttcttcaacaggacaac
ttcacgcagttggacattgacaatatggatgtagcttacaaacatggtggaggggattca
cagattgacaggttcacctttatagtctctgataggagcaaccaaggcttcctggtcaat
ggaaagatgcagactgagccagctacattcacaatcgaggtggactacgtggacaaggct
gccccaaggataatttaccttcgatgtccatcaaaagttgacgttttgaaaaatggacga
tatggaatttatatctcttctcgatccttgaaggcatcagatattgacagcaaagatgaa
gagattattttccgcatcctgagccctccactctttgggtacctggaaaatgtcactagc
ggaggattcattcataatacgttcacacaaagggacctgaatagcaagaccatcctttac
atcattaacccctctgtggaggtgacatccgacactctggaatttcaggtttcagatcgc
acaggaaactcggccatccctcaaattctcgaactcaaatggtctcgtattgaaatggca
ttgtctgagtatcaagtttgtgaagatggaggaacgctgtcggtgaaagtggtgaggact
gggtactccatggaatcatcttttattggtataaaggttaatgacatttcagctcgtgcc
ggaaaggatttcactcacagttctgccaacttaattcagtttgatccaggcgtttcagta
aagggctggaacatcgtaattctcagagatgctctggaagaagaaaaggaaacttttgag
gtcctacttgagtctccagtgaatgcagttcttggtgcaaagacaaaagcattggtcaaa
gtcattgataccagaggaggccgctgtagaaatgaggagcactcaccagtgttcagagat
ggaataaatcctgctttcaggtctttgacacatcgtgtccacggctctgtccgtgttgaa
gaaattccaaactcccagccacgagcagaggggaaccagtcccgtggggatgtaccacag
gagctgccgtcacaacgaacttccaagagcagactccgggccattggaaacggcagaatg
atacgaccatcatcaacatacaggaatgggactgatctcatattcacgtaccatggatta
atgtcgctgagggtcgaggatgacaccgctccttttacctccaataaaagagcaaaagtg
ctggtcaccagccgaggacagcaacattttcctggagagccagaacttccacaggctgac
aaagcagcagcaacgcaacagtctcgcattctgacgggaaagcaggcttattctgctgca
gcttttacgaagcgctgcactccagaactccaaggcctcttgtactttgaccaaagtgct
cagaagctgctgagatgtgatggaattgcatggaaaccatggaacccaaccactgaggag
atcagtgccaaaaagtgtccacctggatggagttatcatgagaatcactgctattatctg
agtagtgagcataaagcaacatggactggagcagctcgagcctgcaaggaaatgcaccag
ggaagtcttgtgagtgtccactccaaacaagacatgacatggctgtgggatttcagtgga
agaagacctttctggattggtctcaatgataggatgagtcttggcaaatgggaatgggcc
ggaggagatcctgtggtcttcacaaactggaaacgaggccctcctcacacaacaaagaag
aaagggaagaactgcgtgctggtgaggagaagaggaaagtggcaggtgaaaaactgtaag
cggggcaagccacaccactacatgtgctcagttcactaa
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