Callorhinchus milii (elephant shark): 103177819
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Entry
103177819 CDS
T03088
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103177819 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103177819 (mtrex)
03041 Spliceosome [BR:
cmk03041
]
103177819 (mtrex)
03009 Ribosome biogenesis [BR:
cmk03009
]
103177819 (mtrex)
03016 Transfer RNA biogenesis [BR:
cmk03016
]
103177819 (mtrex)
Enzymes [BR:
cmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103177819 (mtrex)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103177819 (mtrex)
Spliceosome [BR:
cmk03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103177819 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
103177819 (mtrex)
Ribosome biogenesis [BR:
cmk03009
]
Eukaryotic type
Pre-60S particles
Helicases
103177819 (mtrex)
Transfer RNA biogenesis [BR:
cmk03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103177819 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
103177819
NCBI-ProteinID:
XP_007890364
UniProt:
A0A4W3JX90
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MADAFGEDLFSVFEEESAKKGKGEAGGGGGGGGKHGKTNDGLARGANAVSSAKNKRDLEA
DGSEDVLFGKKPKLEVISMEEINLADLMPKVKVELIETVEGCNHEVVLPKGDEYRQLKPR
IGKAAKEYPFILDAFQREAISCMDNNQSVLVSAHTSAGKTVCAEYAIALALRDKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VVFDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDQAKGDQRGRKGGT
RGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMSKLDFNTDDEKKLVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGVGIHHGGLLPILKETIEILFSEGLLKALFATETFALG
INMPARTVLFTNTRKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKISPTVG
KQLLKGTADALNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQNYKAIPGVVERVKKL
EGQYNDIEIPNEESVVTYYKIRQQLAKLGKEIEEYVRKPKYCLPFLQPGRLVKVKNEDDD
FGWGVVINFTKKPSAKSNTGDLDQIYVVEALLHCSKESLKLAASEAAKPTKQGEKGEMQV
VPIILHLITSISSVRLYIPKDLRSVDNRQSVLKSMQEVQKRFPDGVPLLDPVDDMGIKDQ
GLKKVIQKLEAFEQRMYSHPLHNDPNLETVYKLCEKKAQIAADIKTAKRELKKARTVLQM
DELKCRKRVIRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGIFNDLTAEQATAL
LSCFVFQEKANEMPKLTEQLAGPLRQMQECARRIAKVSAEAKLEVDEDMYLESFRPQLMD
VVFTWANGATFAQICKMTEVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFSEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggcgaggacctgttcagtgtgttcgaggaggaatcggcgaaaaaa
gggaaaggagaagcaggaggaggaggaggcggcggcgggaaacacggaaagaccaacgat
ggattggctcgaggagcaaatgccgtctcctctgccaagaacaaacgtgacctggaggct
gatggttcagaagatgtcttgtttgggaaaaagcccaaacttgaggtcatctccatggaa
gaaattaatcttgcagacttgatgccaaaggtgaaagtggagctaattgaaactgtagag
ggctgtaaccatgaggtggtgcttccaaagggtgatgaatatcgacagctaaaacctcgc
ataggaaaagcagcaaaggaatacccttttattcttgatgcttttcaaagagaggctatt
tcatgtatggataacaaccagtctgtgcttgtatcagcgcacacatcagctggcaaaact
gtttgtgccgagtatgcaatagcactagctttacgcgacaagcaacgagttatcttcacc
agtcccatcaaagctttgagtaatcagaagtaccgtgagatgtatgaagagtttcaggat
gtgggactgatgactggtgatgtcactatcaatccaactgcgtcctgtctggtcatgaca
actgagattttgagaagtatgctgtacagaggatcagaggttatgagggaagtagcctgg
gttgtctttgatgaaatccattacatgagagatgctgagcgaggtgttgtgtgggaggaa
acaatcatccttcttccagacaatgttcactatgtattcctttccgcaactattcccaat
gcacgtcagtttgctgagtggatctgtcacctccataagcagccctgtcatgtgatatat
acagactacagacccacacctctgcaacactatatctttccagcaggaggtgatggactg
cacctagttgttgatgaaaatggagattttagagaagataactttaacacagccatgcag
gtcctgagagatgcaggtgatcaagcaaaaggtgatcagaggggtcgaaaaggaggaaca
agaggaccatcgaatgtattcaagattgtgaagatgataatggaaaggaactttcagcct
gttatcattttcagcttcagcaagaaagattgtgaagcttacgctctacagatgtccaag
ctcgatttcaatacagatgatgaaaaaaagctggtggaggaggtattcaataatgctatt
gactgcttgtccgatgaagataaaaagcttcctcaggttgagcatgtattgcccctttta
aaaagaggagttggaatccaccatggaggattacttcctattttgaaggaaaccattgag
attcttttctctgaaggactgctgaaggcattgtttgctacagagacctttgctctgggt
atcaatatgccagcaaggaccgttctatttaccaatacgcggaaatttgatgggaaagac
ttcagatggatttcttcaggagaatatattcagatgtctggccgtgctggtaggcgtggc
atggatgaaaggggcattgttattctcatggtagatgaaaagataagtccaactgttgga
aaacagcttctaaagggtacagctgatgctcttaacagtgcctttcacctgacgtataac
atggttttgaatctgcttcgtgtcgaagagatcaaccccgaatatatgttagaaaaatcc
ttctaccaattccagaattacaaggcaatcccaggagtggttgaaagagtcaagaaattg
gaagggcagtacaatgacattgaaatccccaatgaagaaagtgtagttacttactacaaa
atacgacagcagttggctaagctgggcaaagaaattgaggagtatgtacgcaagccgaaa
tattgcctaccatttcttcagcctggaagactagttaaggtgaaaaatgaagatgatgac
tttggctggggagttgtcataaatttcacaaagaaacctagtgcaaagtcaaatactgga
gacttggatcaaatttatgtggttgaagctttgttacattgtagtaaagagagcctgaaa
cttgctgcatctgaggcagcaaaaccaacaaaacaaggagaaaagggagagatgcaggtt
gttcccattatacttcacctaataacgtctattagcagtgtgcgtctttacattcctaaa
gatctaagatcagtggacaataggcagagtgttctgaaatctatgcaggaggtacagaag
cgatttcctgatggcgttcctttgttagatccagttgatgatatgggaatcaaggatcaa
ggtctaaagaaagtaatccaaaaacttgaggcatttgagcaaagaatgtattctcatcca
ttgcacaatgaccccaatctggaaactgtctacaaactttgtgagaagaaagcgcaaatt
gctgcagatatcaaaacagcaaagagagagctgaagaaagctagaacagttttacaaatg
gatgaactaaagtgccgtaagcgagtgatcaggagattgggttttgctacttcctctgat
gtcattgaaatgaaaggacgagttgcttgcgaaataagcagtgccgatgaacttcttctg
actgagatgatgtttaatgggattttcaatgacttgactgctgagcaagctacagcttta
cttagctgttttgtatttcaggaaaaggcaaatgaaatgcccaaattgacagaacaattg
gcagggccattacgacagatgcaggaatgtgctagaagaatagccaaagtgtcagcagaa
gccaaactagaggttgatgaggatatgtatctggagtcatttcgacctcaattaatggac
gtagttttcacgtgggcgaatggagccacttttgctcagatctgtaaaatgacagaagtt
tttgaagggagcatcattcgttgtatgagacgactggaggaactccttcgtcagatgtgt
caagcagcaaaggccataggaaacacagaactggaaaacaaattctcagaaggcataacc
aagatcaaaagagatattgtatttgctgcaagtctttacttgtaa
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integrated database retrieval system
