Callorhinchus milii (elephant shark): 103178336
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Entry
103178336 CDS
T03088
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103178336 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103178336 (hbs1l)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103178336 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
Motif
Other DBs
NCBI-GeneID:
103178336
NCBI-ProteinID:
XP_007891212
LinkDB
All DBs
Position
Unknown
AA seq
669 aa
AA seq
DB search
MSRHRNVRGLKYDEDLEDDDVYGHSVDDDYCISPATAAQFIYKRDDYNVRAFIEEPLEEG
EEEEEPSHNNHPTLPGVDQARLHSCLDRMREVLGESVSEQVMVDAVLSSQFDTQQALDLL
LSQEGKQTSKIKNKDAAPLWNPPIGKVKDQPGRVDCDIVPKVAKMTVSGKQITGFNIPST
AAENDRLRKNETLGSAGLEASSKTNSANPALDEPTAIQTPIKSSSKAKQQIDVKAELEKR
GGKQLLNLVVIGHVDAGKSTLMGHFLYLLGNVNKRIMHKYEQESKKAGKASFAFAWVLDE
TGEERERGVTMDVGMTKFETNTKVITLMDAPGHKDFIPNMITGAAQADVAILVVDASRGE
FEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWHPERFKEISNKLGQFLKQAGFK
ESDVAYIPTAGLNGENLTTRSQVHELKAWYNGACLIEQIDSFKSLQRPVEKPFRLSVSDV
FKDQGSGFCVTGKIKAGYVQSGDRVLVMPPNESCTVKGITLHDEPVDWAAAGEHVTLTVT
GVDIIKINVGCIFCDQKAPIKTCTRFRARVLIFNIDLPITQGLPVLLHYQTVSEPGTIRR
LVSVLHKSTGEVLKKKPKCLTKGQNALIELQTHRTVALELYKDFKELGRFMLRYAGSTIA
AGVVTEIKE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggcacaggaacgtccggggattgaagtacgacgaagacttagaagatgatgat
gtctatggacattcagtggatgatgactactgcatttctcctgcaacagctgctcaattt
atctacaagagagatgactacaacgtacgagcatttatcgaggaacctctggaagaagga
gaggaagaggaagaaccttcccacaataaccatcctacacttcctggagttgaccaagct
cgtctacattcgtgccttgatcggatgcgagaagtcttgggggagtccgtgtcagaacaa
gtgatggttgatgctgtgctgagtagtcagtttgatacacagcaagcccttgatcttcta
ctttcacaagaaggcaaacaaacctcaaagattaagaacaaggatgcagctcctttatgg
aaccccccaataggcaaagtgaaggatcaacctggccgagtcgattgtgacattgtcccg
aaagtagcaaaaatgactgtatctggaaaacagataactggatttaatatacccagcaca
gctgctgagaatgatcgcctgcgaaagaatgagactttaggatctgcaggtctggaggct
tcatctaagaccaattctgcaaatcctgcgctcgatgaacctacagcaatacagactccg
attaaaagctcctccaaagccaagcaacagattgatgtgaaagctgagcttgaaaagaga
ggaggaaaacaactactcaatcttgttgtaatcggtcatgtggatgctggcaaaagtact
ctaatgggtcattttctttaccttctgggaaatgtaaacaagcgcattatgcataaatac
gaacaggaatccaagaaagcagggaaagcctcatttgcttttgcctgggttctggatgag
acaggtgaagaaagagaaagaggtgtgaccatggatgtaggaatgacgaagtttgaaact
aataccaaagtgatcacattaatggatgcaccaggccacaaagacttcattccaaacatg
attactggtgctgcacaggctgatgtggcgatcttagttgtagatgcaagtagaggagag
tttgaagctggatttgaggccggtggacaaaccagagagcacgcgttactagttcgttcc
ctcggtgtaacacagttggctgttgctgttaacaaaatggatcaggtgaattggcaccct
gaaagatttaaagagatttcgaataaacttggacagttcttgaagcaagcaggcttcaag
gagtctgacgttgcttacattcccacagctggattgaatggcgagaatctaacgacacga
agtcaagtacatgaactcaaagcttggtacaatggagcttgtctgatagagcaaattgat
tctttcaagtcgctgcaaagaccagtggaaaaaccgtttagattgagcgtatccgatgtt
ttcaaagatcaaggatcaggattctgcgttactggtaaaatcaaagcaggatatgttcag
tctggagaccgagtgcttgtcatgccaccaaatgaatcctgtactgttaagggaatcaca
ttacacgatgagccagtcgattgggctgcagcaggggaacacgttactctcactgtgact
ggtgtggatattataaaaataaatgtgggctgtattttctgtgatcagaaagcacctatt
aaaacatgcacaaggtttagagctcgagttcttattttcaatattgatttgccaatcaca
caaggtttgccagtgttattacattaccaaactgtgagtgagccaggaacaatccgaaga
ctagtgagtgttctgcacaagagcacaggagaggttctcaagaaaaaacccaaatgtttg
actaagggacagaatgcgttgatagagctgcaaacacatagaaccgttgctctggaactc
tacaaagactttaaagagctaggtcgctttatgctacgttatgctggatccactattgca
gcaggagtagtcacagagatcaaagaatga
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