Callorhinchus milii (elephant shark): 103178963
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Entry
103178963 CDS
T03088
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103178963 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmk03041
]
103178963 (cdc40)
Spliceosome [BR:
cmk03041
]
Complex C
Other components
Step II factors
103178963 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
EIF3I
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_SCAP
WD_LRWD1
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
103178963
NCBI-ProteinID:
XP_007892172
UniProt:
A0A4W3J3U6
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MSAIAALASYDSDDESDTEVGQVPCRDAVAHLHPLPSGKSLSDLHKSLALNAAPDVAVKE
DVQAGFHLDPSLKEVDFNPSYETMFAPELGPVNPFRTQQMAAPRNTLSGFAEPAHINDFM
FEQQRRTFHTYGYALDPTVDRSEVPGGDTYIGSVEEAEKNQGLTVFESGKKKIEKRKKLK
DSNPANIEGFQGPWAKFVDEKDVAKPSEEEQKELDEIIAKRQKKGKHEDDKPAEEKTVLH
VKDMYDYQGRSYLHIPQDLGVNLRSSEPPEKCYLPKKQMHIWTGHTKGVSAIRLFPRSGH
LLLSCSMDCKIKLWEVYNDRRCLRTFIGHSKAVRDICFNNEGTQFLSAAYDRYLKLWDTE
TGKCLVKFTNRKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDIRSGEVVQEYDRHLGAVN
TITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMD
NQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVASGDADGKLNIWDWKTTKL
YSRIKAHDKVCISAIWHPHETSKVITCGWDGQIKLWD
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccatcgcggctctggcttcgtacgacagcgacgacgagtcggacacggaggtc
gggcaggttccctgcagagacgccgtggctcatctgcacccgctcccttcggggaagtcg
ttgtcggacctccataaatccctcgccttgaacgcggcccccgacgttgctgtgaaggaa
gatgtacaggccggttttcatcttgatccatctctgaaggaggtcgacttcaatccatca
tatgaaaccatgtttgcaccagagcttggtccagtaaatccctttagaacacagcagatg
gctgctcccagaaatacgctatctgggtttgctgagcccgcccatatcaatgatttcatg
tttgagcagcagcggaggacctttcatacttacgggtatgctttagatccaactgttgac
cgcagtgaagtacctggaggagatacgtatattggtagcgtggaagaggctgagaaaaat
caaggacttacagtgtttgaatccgggaaaaagaaaatagaaaaacgaaagaaattgaaa
gattcaaacccagcaaatattgaaggttttcagggcccttgggcgaagtttgtggatgaa
aaagatgtggccaaaccatcagaggaagagcagaaagaactcgatgagatcatcgcaaag
agacagaagaaaggcaagcatgaggatgacaagccagcagaggagaaaaccgtcctgcac
gtcaaagatatgtacgactaccaaggaagatcataccttcatattcctcaggatcttgga
gtcaatttacgatcttcagagccaccagagaaatgttatcttcccaaaaaacagatgcat
atatggactgggcacacaaagggtgtcagtgctattcgattgtttccaaggtctggccac
ttgctgttgtcttgttccatggactgtaaaatcaaactttgggaggtttataatgatcgc
agatgtcttagaacattcattggtcatagtaaagctgtccgagacatctgcttcaacaac
gaaggcacccagttccttagtgctgcttatgatcgataccttaaactctgggacacagaa
acagggaaatgccttgtcaagtttactaatcgaaaggttccatactgtgtcaaattcaat
cctgatgaggacaaacaaagcctatttgtggctggaatgtccgataagaaaattgtacag
tgggacattcgatctggagaagttgttcaggagtatgatcggcatctgggagctgtcaac
accattacatttgtggatgaaaaccggcgctttgtgagcacatctgatgacaagagtctt
cgagtctgggaatgggacattcctgtggacttcaagtatattgctgagccaagcatgcac
tccatgccagcagtaacattgtcaccaaatggcaaatggctggcttgtcaatcaatggac
aaccagattctaatctttggagctcaaaatcgctttagactcaataagaagaagatcttc
aagggccacatggtggctggctatgcatgtcaagtggatttttcacctgatatgagttac
gtggcttcaggagatgcagatggaaagcttaatatctgggactggaagacaacaaaactt
tatagtcgaataaaagcacacgataaagtctgcatcagtgcaatctggcacccacatgaa
acttccaaggttatcacatgtggctgggatggacagatcaagctatgggactga
DBGET
integrated database retrieval system
