KEGG   Callorhinchus milii (elephant shark): 103179211
Entry
103179211         CDS       T03088                                 
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03013  Nucleocytoplasmic transport
cmk03015  mRNA surveillance pathway
cmk03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103179211 (eif4a3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    103179211 (eif4a3)
   03015 mRNA surveillance pathway
    103179211 (eif4a3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmk03019]
    103179211 (eif4a3)
   03041 Spliceosome [BR:cmk03041]
    103179211 (eif4a3)
   03009 Ribosome biogenesis [BR:cmk03009]
    103179211 (eif4a3)
   03012 Translation factors [BR:cmk03012]
    103179211 (eif4a3)
Enzymes [BR:cmk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103179211 (eif4a3)
Messenger RNA biogenesis [BR:cmk03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     103179211 (eif4a3)
   mRNA cycle factors
    Stress granule specific factors
     103179211 (eif4a3)
Spliceosome [BR:cmk03041]
 Complex C
  Other components
   EJC/TREX
    103179211 (eif4a3)
Ribosome biogenesis [BR:cmk03009]
 Eukaryotic type
  90S particles
   Helicases
    103179211 (eif4a3)
Translation factors [BR:cmk03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    103179211 (eif4a3)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 Cas3-like_C_2 AAA_30 Flavi_DEAD
Other DBs
NCBI-GeneID: 103179211
NCBI-ProteinID: NP_001279782
UniProt: K4FRI9
LinkDB
AA seq 403 aa
MASSGRKRLLKEEDISKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRA
IKQIIKGRDVIAQSQSGTGKTATFCISVLQCLDIQVRETQALILAPTRELAGQIQKVLLA
LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE
ADEMLNKGFKEQIYDVYRYLPPATQVILISATLPHEILEMTNKFMTDPIRILVKRDELTL
EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH
GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS
GRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1212 nt   +upstreamnt  +downstreamnt
atggcgagctcggggaggaagcggctgctgaaggaggaggacatctccaaggtggagttc
gagaccagcgaggaggtggacgtcacccccaccttcgacaccatgggcctccgggaggac
ctgctccgcggcatctacgcctacggctttgaaaaaccatcagccattcagcaaagagca
atcaagcaaatcattaaaggaagagacgtaattgctcagtcacaatccggtacaggaaaa
acagcgactttctgtatatctgtattgcagtgcctagatattcaggttcgtgaaacacag
gctctaatattagcaccaactcgagagctggcaggacaaatacagaaggtcctacttgcc
cttggagattacatgaacgtacagtgtcatgcttgtattggagggaccaatgttggtgaa
gacattcgaaagttggactatgggcaacatgtagttgcgggtactccaggtcgtgtgttt
gatatgattcgacgcagaagcttgaggacgcgtgccatcaaaatgttggttcttgatgaa
gctgatgaaatgctgaataaaggttttaaggaacagatctatgatgtgtacaggtatctg
ccacctgccacacaggtcattctgatcagtgctacgctgcctcatgagatcttggaaatg
accaacaagttcatgactgatccaatccggatcttggtcaaacgtgatgagttgaccttg
gaaggaatcaaacagttctttgtggcagttgaaagggaggaatggaaatttgatacattg
tgtgatctttatgacacactgaccattactcaagctgtcattttctgcaacacaaagagg
aaggtggactggcttacagaaaaaatgcgagaggctaacttcacagtgtcctctatgcat
ggtgacatgccacaaaaggaaagagaatccatcatgaaggaatttcgttctggggcaagc
cgagtgcttatttctacagatgtttgggccagaggactggatgttcctcaagtgtcactg
atcataaactatgatttaccaaacaacagagaattgtatatccacaggattggtcgatca
ggccgttatggacgcaaaggtgtggccatcaattttgttaagaatgatgacattcgtatt
ctgcgagacattgaacaatactattcaacacaaattgatgaaatgccaatgaatgttgct
gaccttatttaa

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