KEGG   Callorhinchus milii (elephant shark): 103179892
Entry
103179892         CDS       T03088                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03030  DNA replication
cmk03410  Base excision repair
cmk03420  Nucleotide excision repair
cmk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103179892 (rfc4)
   03410 Base excision repair
    103179892 (rfc4)
   03420 Nucleotide excision repair
    103179892 (rfc4)
   03430 Mismatch repair
    103179892 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmk03032]
    103179892 (rfc4)
   03036 Chromosome and associated proteins [BR:cmk03036]
    103179892 (rfc4)
   03400 DNA repair and recombination proteins [BR:cmk03400]
    103179892 (rfc4)
DNA replication proteins [BR:cmk03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103179892 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    103179892 (rfc4)
Chromosome and associated proteins [BR:cmk03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103179892 (rfc4)
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103179892 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    103179892 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_assoc_2 AAA_16 Mg_chelatase AAA_11 AAA_22 AAA_30 AAA_24 SLFN-g3_helicase AAA_28 AAA_14 RuvB_N DUF815 AAA_19 AAA_5 ResIII Gp44_lid DNAX_ATPase_lid Kinesin AAA_7
Other DBs
NCBI-GeneID: 103179892
NCBI-ProteinID: XP_042195031
UniProt: A0A4W3HPC8
LinkDB
Position
Unknown
AA seq 358 aa
MQAFLKGAGATSIKPAKEKAAGSSGESKKQKSMPWVEKYRPKCMDDVAFQEEVVSVLKKS
LQGADLPNLLFYGPPGTGKTSTILAAARELFGPELYRQRILELNASDERGIQVVREKVKN
FAQLTVAGTRSDGKTAPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLADSVQERRLLDICEKENVTYTDEAISTLVNVSEGDLRKAITYL
QCSVRLMGGNSITGKVITEIAGVISAEMIDGLIAACYSSSFEKLETVVKNMINEGHAATQ
LINQLHDIIIDKEDLNDKQKSAITEKLAEVDKCLADGADEFLQVIGLCAVIMQQFTQN
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgcaagcttttctgaagggagcaggagccaccagcatcaaaccggcaaaagaaaaggca
gctgggagcagcggagaaagcaagaaacaaaagtcaatgccatgggtggagaaatatcgg
ccgaaatgtatggatgatgttgcgtttcaagaggaagttgtgtctgtgctgaaaaaatcg
ctgcaaggagctgatcttcccaacttgctgttttatggtcctcccggaacaggaaagacc
tccacaatattggctgcagcacgggagctttttgggcctgagttgtaccggcagcgaatt
ctggagctgaacgcctctgatgaacgcggcatccaggttgtaagagaaaaggtgaagaac
tttgcccagctgactgtggctgggactcgatcagatggaaaaactgctccaccatttaaa
ataatcatcctggacgaagcggactccatgacaaatgctgctcaggctgccctccggcgc
accatggagaaagagtccagaaccactcgcttctgcctcatctgcaactatatcagtagg
ataattgaaccgctgacctctcgatgttctaaattccgttttaaacctttggcggatagt
gtacaagaacgcaggttgctggacatctgtgagaaggagaatgtaacatacactgatgag
gcaatctctactcttgtgaatgtttcggaaggagacctgaggaaggcaataacgtacctg
cagtgttcagtgcgacttatgggaggaaacagcatcacagggaaagtcattactgaaatt
gctggggtgatttcagctgagatgattgatggcctcatagctgcatgctacagtagctca
tttgaaaaactggaaaccgttgtaaagaacatgatcaatgaaggtcatgcagcgacacag
ctaatcaaccagcttcacgatatcatcattgataaggaggacttgaatgacaagcagaag
tcggcaatcacagaaaagctcgcagaagttgacaagtgtttggcagatggggctgacgag
ttcctacaggtgattggtctttgtgctgttatcatgcaacagttcacacagaactga

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