Callorhinchus milii (elephant shark): 103179924
Help
Entry
103179924 CDS
T03088
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cmk03009
]
103179924 (utp20)
Ribosome biogenesis [BR:
cmk03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
103179924 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
MBTPS1_3rd
Motif
Other DBs
NCBI-GeneID:
103179924
NCBI-ProteinID:
XP_007893650
LinkDB
All DBs
Position
Unknown
AA seq
2768 aa
AA seq
DB search
MKPKSSNRKSENTFRFLTFSERLSNVNIDIIHRIDRTGSYNEEVETYFYEGLNKWRDLNC
TGHFVTFYKEVYGKSQSFNQLVYYQNGLVESLKSHLQIKGSLAYQPLLDLVVQLARDLQT
DFYPHFKDFFLIITSLLDTQDTELLEWAFTCLSYLYKYLWRVMVNDITDIYSLYSSLLAH
NKEHIRNFAAESFAFLMRKVPDHHALFNCLFMDLEEHSEKAEGMGRLFFEMCKGVRNMFH
SCATKVFPIILKKMGPVTETSVVLPWITVGEAVGHMAKASASYIFKEHLGLLWSCLQNCV
LELCENLNNDNLSEGSEQLERLLQICLHLLEHGQGSKVTDPEMFCEMLIRMLQNSQLPAP
CCKTLLKVISTLLLTEHISLPETLIEETAGKIFESGFERVLILDFSEEMFSMKQFEQLLL
PSLLEYIEQCFAMDNTSARKGALELLVKLILTKAEPPTIGSMAFEKYPLHFTGRTQDSNL
KNLRNSNGGQVTLVLDYILSLLDLPEDGSMSDLSNPWAALIILPHIRPMKTEKVLSSVKL
LLDNLLTSIENSGTAGKGLLLVIRQAVSTLLNLTESDEILSFLPAERVRNLVKKSPSDIS
ALLLGDLYYTRLAVCGCKDLLSQEVLLDLFKELEQNLSTNVSKVRLLTLRILNHFEVKLT
KKAEDDNAGDFQSVFAILLQAELVPATVHDYREKLLHLRKLRHDLVQPCIPEGPYQVVPL
WYLIGMLYINFSPLWDPVVELIVSHANEMENKTFWQVYYEHLDRAAILTENELKHELGEE
RDKKPIQDSERFQLDSSTGLFQDQLDLAISSNDRTQFDNFRFLLWKAMAEFPNRVEPRSR
ELSPLLLRFINNEYYPADLLAAPTENIKKKMHDDEKMVTAEEQEDTFTNNNGNKPKASEA
KFPGGRRPRRAAVKQLIVHLKVFSKFTNPHSLYLEPKLKELYTQLLCHQNQDVQKIALQC
LSTYKYHYLVPYRENLERLLEDKSFKEEIIHFSIAEETTIVKVSHRPELIPIIMRILYGR
MRSKTGAKTQGKAAAGTRMSIVLQFLAGSLPEEMRVFLNLLFEPVKQFTQGTCLPAVLRI
LEDLDLTKIPSLGRQHSLLNGIEVVMKKMSHLIGDYLPELLQILLCTTALVSQILELRDQ
IQPRCINQLKHLRRLGINQICAFFSDFEFYNFTVDEIDAVFHGVVWPQISRLPFEGQYAP
TPVLKLIHVWSKNARYFPILAKQREDHPEDDILANVFALLSAKYIAEPTAAIVLDIVDNL
LSTPDFTVTENEISLTVNNAVFPEARDIVEDSPSMGTCLVLPYISIILQYLNNLVGNSEK
MRKKNFRAQVSKNLSILSRISKFVQDKEQSSVLISLLLPYLFKPNTPQDTEIDILKTIRN
LLKQCLNPSSFLKPLSTLFSVIKNKLSRQTLCEVFETLSELNSSLTYIIEVNTKLNAFDR
RHLDDIDFDHRLIAFQAATGFIKEMQSLDMLYLIPIMHNCFYSIQLCEMTLSDSATVCLI
AIIHQLAAVNSSEDEYKEIINRSLLVTLRRCLKSKTESVRHEYTTLLSSLIATFPQKPEF
QDLVQLTDKDQEMDFFENMKHIQVHRRARALRKLAKQLDEDKITLSSKSLVNYIMPYATS
TLFDEKMLTFENMTTSSVEIVGAICKHLTWSPYIYYLKYYIHVLHTGQINQKLSVSLLLS
VLEAFHFDQETLQKELDVIQTLENADAMKADEGEVEAMDLEDSVIDIDEEKEDCAERIEK
PHEDMTVVEDSQTNEANGSVSSQKKSQIEHIQETVTNSILPKLHKCLIAKVQREEQHKLV
KSKIVNDEELIRIPLAFAMVKLMQALPKEVMEGNLPSILMKVCILLRNRAQEMREAARKT
LTKIIETLGPKYLLYLLKEMQSILTHGYQVHVLTYTINMLLKALITKLESGDLDSCMEIL
IKIFNHELFGQVAEEKEVKGIVSKVMEARSSKSFESYEILAQFVGKARVTQLILPLKELL
EVTTSLKQARKIHETFRRIVSGLLVNKEMTAESILLLSNGLVTESLPLLIKKTKPAFKAS
KKTLRPHSCLLLSPTPTRGGAKPAVSTRTNTNILVDTGLRLLHLSLKASKVNSSDEKVLE
MLDPFIELLLDCLQSMHVKVITSALQCLIWVLKFPLPSIKIHIEQMIKQLFVLLKDYARA
GAAKGENFNLVVNCFKSITILVRNVKQHRITDKQLQVLLGFAEEDIYDSSRRATAFGLLK
AIVSRKLIVPEMNDVMQKVGTFAITGLSESVRVQCRQVFLKFILDYPLGKKLKVHLEFIV
AQLSYEHEMGRESALEMLSYIIQSFPQGLLHQHCGLLFVPLALMFMNDDSPKCKKMASLT
IQSLLNKVSTQNQDLLFSLVLSWFKSKKSSHRRLAAQICGLFAEAEGIGFEKRLERVLPI
IETQINPVRFENFQEGTKEKAADRLLFSFLTLVMKLAKECNFINLRKSRTILTNIWSHIQ
SHLRYPHSWVWSTSSQLFGMLFAFHTPEQLVAKWNSNKINSSELPATRFLIEDLDKKMKD
LFFAFHHQLQSQFLDQTLGEQVVKNLLFIAKVIHLLAPPDGDDMEQEEGTEEIEDDQETE
KADEETAEDKDTKEGEEKKATLIWVMEKLCKLAKKEAAYTPKITLKRICVFKFLGAIAVD
LGNEKVIPYLRTIIAPLYRELNSTYSDQDPTLKNLSQEIIELLKKSVGLETFSLSFAAVQ
KQANQKRALRKTQKALQTVANPDIAARKKLKKHRHKMEAKKRKIEFLRPGNKAKRARVTT
LKSLAMVE
NT seq
8307 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaaagtcatccaatcgtaaatcggaaaacactttccggttcctcaccttttcg
gagcgtttatcaaatgtaaacattgatataatccaccggattgatcgaactgggagctac
aatgaggaagtggaaacctacttttatgaaggactgaataaatggagggatttgaactgc
acaggacattttgtgacattttacaaggaagtgtatggaaaatcgcagtcattcaatcag
ctggtatattatcagaatggattggtggaaagcctgaaaagtcatcttcaaatcaagggc
agtctggcgtatcaacctttgcttgaccttgtggtgcaactggctagagatctgcaaaca
gatttttatccccactttaaagatttctttttaatcattacctccttgctggatacccaa
gacacagaattgttggagtgggccttcacctgtctctcttacctgtacaagtacttgtgg
cgggttatggtaaatgacatcactgatatttatagcttgtacagttcactcctggcccac
aataaagagcacattagaaattttgcagctgaaagttttgctttcctgatgagaaaggtt
ccggatcaccatgcacttttcaactgcttgtttatggatttggaggagcattctgagaag
gcagaaggaatgggtcgattgttttttgagatgtgtaaaggagtccgaaatatgtttcac
tcatgtgcaaccaaggttttccccatcatcttaaaaaaaatgggacctgttacagagacc
agtgtggtattaccatggattactgtgggagaagcagttggacacatggcaaaggcatct
gcatcttacatcttcaaggaacacttaggtttactatggagctgtttgcaaaattgtgtt
ctggaattgtgtgaaaacttaaacaatgataatctcagcgaaggttcggaacaattagag
cgattgctgcagatctgccttcacctgcttgaacatggacagggatctaaggttactgat
cccgagatgttttgtgagatgttaataagaatgttacagaattcgcagctccctgctccg
tgctgtaagaccttgctgaaagtaatttcaacactgctgctgactgagcacatttcactg
ccagaaacactgattgaagaaactgctggaaagattttcgaaagtggatttgagagggtg
ttgattttggatttctcagaggagatgtttagcatgaagcagtttgaacagttattgctg
cccagcttactggaatatatcgaacaatgctttgcaatggataatacatctgctaggaaa
ggcgcactggaactgttagttaaactgattttgaccaaagctgaaccgccaactattgga
tcaatggcatttgaaaagtatcccctccactttacaggacggacacaggattctaacctg
aagaatctgaggaattcaaatggaggacaagttactttggttttagattatattttatct
ttacttgatctgcctgaagatgggagtatgtccgatctttcaaatccttgggctgccctc
atcattcttcctcatatcagaccgatgaaaacagaaaaagtactgtcctctgttaaattg
cttctagataatctgctgacatctattgagaacagtggtactgcaggcaaaggattgctg
ttggtaatccgtcaagcagtcagcacccttttgaatctgacagagtctgatgaaattctt
agctttctacctgctgagcgtgtaagaaacttggtgaaaaaatctccgtcagatatctca
gctcttctgttaggggacctttattacacccggctggctgtatgtggctgcaaagattta
ctttcacaagaggttttgcttgacttgtttaaggaacttgaacaaaatctttctacaaat
gtatcaaaggtgcgactacttacactgcgaatcctgaatcattttgaagtcaaacttaca
aaaaaagcagaggatgataatgctggagattttcaatctgtgtttgcgattttacttcaa
gctgaacttgtccctgcaactgttcatgactacagagagaaattgttacatctgcggaaa
ctaaggcatgatctagtacagccatgtataccagaagggccatatcaagtggttcctctt
tggtatttgatagggatgctttacataaatttcagtcccttgtgggatcctgtcgtggag
cttattgtttctcatgcaaatgaaatggaaaataaaacattctggcaagtatattatgaa
catttagaccgagcagctattttaacagagaatgaactaaaacatgaattgggagaagaa
cgagacaaaaagccgatccaagatagcgagagattccaattggatagttcaacaggattg
ttccaagatcaactggacttagcaatcagctccaatgatagaactcagttcgacaacttc
cgattcctattatggaaggcaatggctgaatttcctaatagagttgaacctcgatcaagg
gaactctctcctttgcttctgagatttattaacaatgagtattacccagcagatttgctg
gcagcccccactgagaacattaagaaaaaaatgcatgatgatgagaagatggtgactgca
gaagaacaggaggatacatttacgaataacaatggcaataagccaaaagcttctgaagca
aagtttcctggaggaaggaggccgaggagggctgctgtaaaacaacttattgttcatctg
aaagttttctctaaatttaccaacccacattctctttacctggaacccaagttgaaggag
ttgtacactcagcttctgtgccatcaaaatcaggatgtgcagaaaattgccttgcagtgt
ctctccacctacaaataccattacctggtaccttatagagaaaaccttgagagactattg
gaagacaagagttttaaagaagaaatcatccatttcagcattgcagaggagactaccatt
gtgaaggtctcacacagaccagagctgattcccattatcatgagaatactttatggacgt
atgaggagtaaaactggcgctaaaacccaaggcaaagcagcagcaggcacacgaatgtcc
atcgttctacaatttctggctggttctctaccggaggagatgcgagtgttcctgaattta
ctctttgaaccagtgaagcagttcactcaggggacgtgtctgcctgcagtgttacgaata
ctggaggatctggatttaacaaaaatcccatctctaggacgtcagcatagtttattaaat
ggcattgaagttgtgatgaaaaagatgagccatctgatcggtgattatctgcctgagctt
ttgcagattttgttgtgcacaacggcattagtatctcaaatacttgaactgagagaccag
atacagccaagatgcataaaccagctgaaacatttgagacgtctgggaatcaatcagatt
tgtgcttttttttctgattttgagttctacaacttcacagtggatgagatcgatgcagtg
tttcatggggtagtctggccacagatcagcaggcttccctttgaaggccagtatgcacca
actcctgtcctgaaattgattcatgtttggagtaaaaatgccaggtattttcctattctt
gctaagcaacgagaagatcacccagaggatgatattctggcaaatgtatttgctttactc
tcagctaagtacatagcagaaccaacagctgctattgttttggatattgttgataatctg
ctgagtacaccagacttcacagtcacagaaaatgagattagcttgactgtgaacaatgct
gtgtttccagaagctcgagacattgtagaagattctcccagcatgggcacgtgccttgtc
ctaccgtacatttctataattttgcagtacctcaataatttggttggaaactctgagaag
atgaggaagaaaaacttcagagctcaagtcagcaaaaatcttagtattctttcaagaata
agtaaatttgtgcaggataaggagcagagctctgttctgataagtctcttgctaccctat
ctcttcaagccaaacaccccacaggacactgagattgatatccttaaaacaatccgaaac
ctcctgaagcagtgcttgaacccttccagcttcctgaagcctttgtcaactctcttctct
gtcatcaagaacaaactttcacgccagacactttgtgaggtctttgagaccttgtcggaa
ctgaacagcagcttaacatacattattgaagttaacacaaagttaaatgcctttgatcga
cgacatcttgatgacatcgactttgaccaccgtttgattgcgttccaagcagcgactggt
tttatcaaagagatgcaaagtctggatatgctctacctcattccaattatgcacaactgc
ttttactccatacagttgtgtgagatgactctgagcgacagtgcaacagtctgtttgatt
gccattatccatcagttggctgccgttaacagttcagaagatgaatacaaagaaataatc
aatcgtagtctgctggtaacattaagaagatgcctgaaatcaaagactgagagtgttcgg
cacgaatacacgactcttctttcctcgttgatcgctacattcccacagaagccagagttc
caggatttagttcagctaactgataaggatcaagaaatggatttctttgagaatatgaaa
cacatacaggttcacagaagagctcgtgcattgagaaaactagccaagcagcttgatgag
gacaaaatcactctatcctccaaatcgctggtaaactacatcatgccatatgcaacctca
actctgtttgacgaaaaaatgcttacgtttgaaaacatgactacctcttcggtggaaatt
gttggagctatctgcaagcatctcacatggtctccatacatttattatctgaaatattac
atccacgtactgcatactggacaaatcaatcagaagctatcggtcagcttgttgctctct
gtattggaagcttttcattttgaccaagaaaccttgcagaaagagcttgatgtaattcag
acactagaaaatgcagatgctatgaaagcagatgaaggagaggttgaagctatggatttg
gaagacagtgttatagacattgatgaagagaaggaagactgtgcagaacgtatagagaaa
ccacatgaggatatgactgttgtagaagattcacagacaaatgaagctaacggatccgtt
tcctctcagaaaaagtcccaaattgaacacattcaggagacagttactaacagcatattg
ccaaagctgcacaagtgcttaattgcaaaggtccaaagagaagagcaacacaagttggtg
aaatccaaaattgtgaatgatgaagaattgattcgtattcctctggcttttgctatggtt
aagttgatgcaggcacttcccaaggaagttatggagggcaatttacccagtattctcatg
aaagtatgcattctgttgagaaaccgtgcacaggagatgcgtgaagctgctcgcaaaaca
ctcaccaaaataattgagacgttgggaccgaaataccttttgtaccttcttaaggagatg
cagtcaattctaactcatggctaccaggtccatgttctgacatacactatcaacatgttg
ttaaaggctctcataacaaaacttgaaagtggagatttggactcttgtatggagattcta
attaagatttttaaccatgagctgtttggacaagttgctgaagaaaaggaagtgaagggg
atcgtgtccaaagtgatggaagccaggagcagtaaaagctttgaatcctatgagatcctg
gctcaatttgtgggaaaggcccgagtcactcagttgattctgccattgaaagagttattg
gaggttacaacaagtcttaagcaagctcgtaagatccatgagactttcagacgaattgtg
tctggtttgttggtgaacaaagaaatgacagcagagtccatccttttactgagcaatggt
ctggtcactgaaagcttaccactactgataaagaagacaaagcctgcattcaaagcatct
aaaaaaacattaaggccgcatagctgccttttattatcaccaacacccacaagaggagga
gcgaaacctgctgttagcacaaggactaacacgaacatcttagttgacactggtctgagg
ttgttacatttgagtttaaaggcatcgaaagtgaactcttcagatgaaaaagttttggaa
atgcttgatccttttatagagctgctgttagattgcctccaatctatgcacgtaaaggtg
atcacaagtgccttgcaatgtctcatctgggtgctgaaatttcccctgccctccataaag
attcatattgagcagatgatcaaacagctatttgtattgttgaaggactatgccagggct
ggagcagcaaaaggagagaactttaatctggtcgttaactgtttcaaatcgataaccatt
ctggtaagaaatgtgaaacagcacagaattacggataaacagttgcaagttctgttggga
tttgctgaagaagatatttatgattcatcacgtcgggcaactgcatttggacttttgaag
gctatcgtgtcaaggaagctaattgttccagagatgaatgatgttatgcagaaagtgggc
acttttgctattacaggtctgagtgaatcagttagagtccagtgtcgtcaggtgtttctc
aaattcattctggattatcctctgggaaaaaaattgaaggtccaccttgagtttattgtg
gcacagctttcctatgaacacgaaatgggaagagaatctgccctggaaatgctgtcttac
atcatccagtcttttcctcagggtctgcttcaccagcattgtggccttttgtttgtgcct
cttgcactgatgttcatgaatgacgattcaccaaaatgtaagaaaatggcatctcttaca
attcagtcactgctgaacaaagtcagtacgcagaaccaagatttgctgttttctttagtc
ttgtcatggttcaaaagtaaaaagtcctctcatcgccgcttagctgcacagatttgcggc
ctgtttgctgaagcagaaggaattggatttgagaagcgtcttgagagagttcttccaatt
attgaaactcaaattaatccggttcgatttgaaaattttcaggagggaacaaaagagaaa
gctgcagaccgactgctgttcagcttcttgactctggttatgaagcttgcaaaggaatgc
aacttcatcaatctgcgcaaatcacgcaccattctaaccaatatatggagtcatattcag
agtcaccttcggtatccccattcctgggtttggtcaacgtcctcccagctctttggcatg
ctgtttgccttccatacgcctgagcagctggtggccaagtggaactccaataaaattaat
tcatcagaactaccagcaacacgttttttgatagaagacctagataaaaagatgaaagat
ttgttttttgcgtttcatcatcagctgcagtcacaattcctcgatcagactcttggtgaa
caggttgtcaaaaatttgctgtttattgccaaagttatccacctcttggcacctcctgat
ggggatgatatggagcaggaagagggcactgaggaaattgaggatgatcaagaaactgag
aaggcagatgaggagacagctgaagacaaagacacaaaagagggtgaagagaagaaagct
actcttatatgggttatggagaaactctgcaaacttgcaaaaaaagaagcagcttataca
ccaaaaattactttgaagagaatctgtgtctttaaatttcttggagctattgcagtggat
cttggaaatgaaaaagtgatcccgtatcttcgcacgattattgcacctctttacagagag
ttaaacagtacttattcagatcaagatccgacactgaagaatctttcacaggaaatcatt
gagctgctcaagaagtcggttgggctggaaactttctcactgagttttgctgctgtgcag
aaacaggcgaaccagaagagagcattgaggaaaacacagaaagccttgcagactgtggca
aacccggatattgctgcaaggaagaaactaaagaaacacagacacaaaatggaagcaaag
aaaaggaaaattgaattcttgcgtccagggaacaaggctaaaagggccagagtgaccacg
ttaaagagtttggccatggtagaataa
DBGET
integrated database retrieval system
