Entry |
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Symbol |
taf1c
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Name |
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C
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KO |
K15214 | TATA box-binding protein-associated factor RNA polymerase I subunit C |
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Organism |
cmk Callorhinchus milii (elephant shark)
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Brite |
KEGG Orthology (KO) [BR:cmk00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cmk03021]
103181005 (taf1c)
Transcription machinery [BR:cmk03021]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
103181005 (taf1c)
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
Unknown
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AA seq |
1367 aa
MTQIHEGRCKRRRGYVMTRIHEGRCKWRRGYVMTRIHEGRCKRRRGYVMTLDHEGSMRRR
DDVAAAPRPGVLCAPHMDNAFPHSLFPGFYNSGPSSGADAEAATVLQAFGDWGSHEQIQP
LHPPAGERQQQQQAGERKWVALRSLARESWDPLEPVAVPLLPPNAVCKFQPASLEDLSYV
GNVMKSRENNELAMRALNFPEQMAYFFIEHRDDAFRSMGKLLEESFYFGDCILRGRARDK
TISVNFLTTFTERVKQRQCPISNNTPRARLSSHLFGESMFDIPPTLLAENVHEEMNFQRN
QLLFNHSATGGALVYWPFSEGSSCEEGCLMYPSTDLMSSLNFRKIKLDFDDDEVPKLNAK
FNKPASVSLNGRINQIACSEVDQEVFVGVRSDYCCGAWKLSKSMKPSPLQVVQVENVATC
VNVSPHLPGELVIASECGTAYLWNVDKGLQRIRKETENLNFNAQLPWRWCDFTAHPRVYL
YADRTGLDLTDVRAGESCNQTLFKMGATASCQRGERVILPKHLQDVHPFHYLITTQYSAY
IIDERFPIVPVLKWRHMMGSPPMFAQVVSGASRNETHKIVLGTQRTQEALLLQYSGGTRL
PCQSFGPPQKLSSNYDMLKQLPVKLFLRQEAVITERLHSPGAGIAAFYHRRGRNSLSVIQ
LSAAGDLFYQTLVPRKNGCDDGNPTKERVGNDSEPISPTLNNGVLSEDPSGHGDPEEVGG
GEGKRSEGASPPLRADKEGTPTLSSQSTRKPPLSRAALVTCRRWLKSFVNKQKELNTNSK
VLPKHCFINVKHKFSCKNSDESGDAYKEVRDRIKSVMEKREILSHSTFPILDPVSVPDPV
DPSVWKDDLSDRLTAAWEEKWSEWWSEKLGMNHDKRIKVLQAKRKNEKSARARHRRGLSG
SFTSSVSEFSDFTDASIWSRTSTENLKESDYLSDTESHTLLNRSTTVSRANGSIVLEQEE
EVQTSAPEAEGSQKSVLDPGPSLEIQLRSMPRERKGILQKYMDALEDNPPQPEQDDEMSY
FLPIATSSQIPLMSTPHVNTNCEAFGPLPSGSQPLPSGSQPLPSGSQPLPSGSQPLPSGS
QPLSSGSQPLSSGSQPLPSGSQPLPSGSQPLPSGRQPLPSRRQPLPSRRQPLPSRRQPLP
SRRQPLPSRRQPLPSGRQPLPSGSQPLPSGSLPSGSQPSGSLPSGSQPSGSQPSGSQPSG
SQPSGSQPSGSQPLPSGSQPLPSRSQPLPSRSQPLPSRSQPLPSRSQPLPSRSQPLPSRS
QPLPSRSQPLPSRSQPLPSQKHPLASHSQTLPSLSQSLLSPSQPSSSLSQSLLSPSQPLP
SQNQALASQNQSLFSQSQSLPSLSQSVLSLSQSVLSQPKKKRARMGF |
NT seq |
4104 nt +upstreamnt +downstreamnt
atgacgcagatccatgagggcaggtgtaagcggcggcgtggctacgtgatgacgcggatc
catgagggcaggtgtaagtggcggcgtggctacgtgatgacgcgaatccatgagggcagg
tgtaagcggcggcgtggctacgtgatgacgttagaccacgaggggagtatgcggcggcgt
gatgacgttgctgcggcgccccgacctggagtgttgtgcgctccccacatggacaacgcg
tttcctcactcgctgttccccgggttttacaactccggtccctcgagcggcgccgacgcc
gaggccgcgacagtcctccaggcgttcggggactggggctcccacgagcagatccaaccg
ctccacccgcccgccggggagcggcagcagcagcagcaggcaggagagcggaaatgggta
gccctgagaagcctggctcgggagagttgggatccgctggagccagtggctgttccgcta
cttcctccaaacgcagtctgcaagtttcaacctgcatccctggaagacctctcttatgtc
gggaatgtaatgaaaagccgggaaaacaacgagcttgcaatgcgtgcactgaacttccca
gagcagatggcttacttctttattgaacaccgtgacgatgccttcaggtcaatgggtaaa
cttttggaagagagcttttatttcggagactgcattctcaggggaagagccagggataag
acaataagtgtaaatttcctgacaacgttcacagaaagagtgaaacagaggcaatgccca
atatctaataacactccccgagcaagactttcaagtcatttgttcggtgagtccatgttt
gatattccaccaactttactggcagaaaacgttcacgaagaaatgaacttccaaagaaac
caacttctgttcaatcactctgccactggtggtgctctcgtgtactggccgttttctgaa
ggatccagctgtgaagaagggtgcctgatgtatcccagcaccgacttgatgagctccctc
aacttccgcaagatcaaattagattttgatgatgatgaagtgccaaagttaaatgcaaag
tttaataagccagcctccgtcagcttgaatggtaggatcaatcaaatcgcctgcagtgag
gtggaccaggaagtgtttgtaggtgttcggtcggactattgttgtggagcatggaaactg
tccaagagcatgaaaccttctcctctccaggtagttcaagtggagaatgtagctacctgt
gtgaatgttagtcctcaccttccaggagagttggtgattgccagcgagtgtggaactgct
tacctctggaatgtagacaaagggcttcagaggattcgaaaggaaaccgagaatctcaac
ttcaatgcccaactgccttggagatggtgtgatttcacagctcacccacgggtgtattta
tacgctgacagaaccggccttgatctgactgacgtgagggctggcgagtcctgtaaccag
acgctgtttaagatgggagctactgcgtcctgccagcgaggggaacgagtgatacttcct
aaacacctacaggatgtgcatccatttcattacctcatcaccacccagtattctgcctac
atcatagatgaacgattccctattgtccccgttctgaagtggaggcacatgatggggtcg
cctccaatgttcgcccaagttgtgagcggggcatcgaggaacgaaactcacaagattgtc
ctggggacgcagcgcactcaggaagcactgcttctgcagtattcaggaggtacacggctt
ccctgccagtcctttggtccaccacagaaactctccagcaattacgatatgttgaagcag
cttccggtcaagttatttctgaggcaagaagcagtcattactgagagacttcactctccg
ggggcaggtattgcagcattttatcatcgtcgcgggagaaattcactttctgtgattcag
ctgtctgcagcgggagatctcttttaccaaactctcgttcctcggaagaatggttgcgat
gacggaaatccaacgaaggagagggtcggaaatgacagtgaacctattagtcctactctg
aacaatggggtactctcagaggatccttctgggcacggagatccagaagaggttggagga
ggggagggcaaaagatcagagggagcctccccgccactcagagcagacaaagaaggaact
ccaacactgagcagccagagtaccagaaaaccaccactcagtcgtgctgctcttgtcaca
tgtcgcaggtggctgaagtcatttgtaaacaagcagaaagaacttaatacaaactctaaa
gtgctgcccaaacactgtttcataaacgtcaagcataagttttcctgcaaaaacagcgat
gaatcgggcgacgcatacaaggaggtgagggatagaattaaaagtgttatggagaagaga
gagatcctttcccacagcacgttcccaatattggacccggttagcgttccagaccctgtt
gatccctcagtttggaaagatgatctgagcgacaggctcacagcagcttgggaggagaag
tggagcgaatggtggtcagagaagcttggcatgaaccacgataagagaattaaagtgcta
caggcgaaaagaaagaatgaaaaatcagctcgagcgagacacagaagggggctgtcaggc
agcttcacctcatcggtgtctgagttttccgacttcactgacgcctcaatctggagcaga
acctcgacagagaatctcaaggagagcgattatctgtccgacacagaaagtcacaccctt
ctcaataggtccactacagtgagccgagcaaacggaagtattgtccttgagcaagaagag
gaggtgcagaccagtgcgcccgaagcagaaggaagccagaaatccgtattggacccaggg
ccctccctagaaattcagttgagatccatgcccagggaacggaaaggaattctacagaaa
tacatggatgccttggaagacaatccacctcaacccgagcaggacgatgaaatgagctac
tttttaccaatagcaacctcttcccaaatcccattgatgtctactccacacgtaaatacc
aattgtgaagcattcgggcccctgccctctggcagccagcccctgccctctggcagccag
cccctgccctctggcagccagcccctgccctctggcagccagcccctgccctctggcagc
cagcccctgtcctctggcagccagcccctgtcctctggcagccagcccctgccctctggc
agccagcccctgccctctggcagccagcccctgccctctggccgccagcccctgccctct
cgccgccagcccctgccctctcgccgccagcccctgccctctcgccgccagcccctgccc
tctcgccgccagcccctgccctctcgccgccagcccctgccctctggccgccagcccctg
ccctctggcagccagcccctgccctctggcagcctgccctctggcagccagccctctggc
agcctgccctctggcagccagccctctggcagccagccctctggcagccagccctctggc
agccagccctctggcagccagccctctggcagccagcccctgccctctggcagccagccc
ctgccctctcgcagccagcccctgccctctcgcagccagcccctgccctctcgcagccag
cccctgccctctcgcagccagcccctgccctctcgcagccagcccctgccctctcgcagc
cagcccctgccctctcgcagccagcccctgccctctcgcagccagcccctgccctctcag
aaacacccactagcctctcacagccagactttgccctcgctgagccagtcactgctctct
ccgagccagccctcgtcctcgctgagccagtcactgctctcccccagccagcctttgccc
tctcagaatcaggccttggcctctcagaaccagtccctgttctctcagagccagtctttg
ccatctctaagccaatccgtgctgtctctgagccagtctgtgctctctcaaccaaaaaag
aaaagagccagaatgggtttttaa |