Callorhinchus milii (elephant shark): 103181036
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Entry
103181036 CDS
T03088
Symbol
npc1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03265
Virion - Ebolavirus and Lyssavirus
cmk04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus and Lyssavirus
103181036 (npc1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
103181036 (npc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cmk02000
]
103181036 (npc1)
Transporters [BR:
cmk02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
103181036 (npc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
DUF4500
Motif
Other DBs
NCBI-GeneID:
103181036
NCBI-ProteinID:
XP_007895425
UniProt:
A0A4W3ILU9
LinkDB
All DBs
Position
Unknown
AA seq
1284 aa
AA seq
DB search
MWSPGRLDGGGGVVLLLTLLGFPTHSVLAQNETCVWYGECGTDEATQKKYNCKYDGKPIP
LPKKGYDLLQELCPNYFYGNVNLCCDVHQLQTLKDNMQLPFQFLSRCPSCFHNFMTFYCE
LTCSPYQNLFLNATKFQRYTENKTSITEVQYYIGSSFTNAMFNACKDVLSPSSNEKALGL
LCGKDAKDCNATNWIQYMCSTSNAQTPFNIIPIFSDNRIGRMLPMNNETKGCNESLDDGS
DACSCQDCSLVCGPKPVPPPPAVPWTIFGLDAMVLIMCFSYSAFIILLAGGALGMWCYRK
MSVASEYAPIIGTSGALSINFSHDSDKITCCDRLGARSEALLRRLFTNWGSFCVRHPAPV
IVLSLVAVSICSSGLLYLKITTDPVELWSAPSSEARKEKHYFDSHFGPFFRTEQLIITAP
NRSATLYSPYPSGSDILFGPPLAKDILDQVLDLQNEIENLKAEYQNETVMLKDICLAPLA
PYNNNCTILSVLNYYQNSHDVLNHSVGDEFYVFADYHTHFLYCTKAPFSLNDTTMLHDSC
LGTYGGPIFPWLVLGGYDNDNYNNATALVVTFPVNNYYNDTEKLNKALAWEKVLIAFIKN
YGNSNLSISFSTERSIEDEINRESNSDVSTILISYAIMFVYISIALGHIRSVQSFLVDSK
ISLGVAGIFIVLSSVACSLGIFSYAGISLTLIVIEVIPFLVLAVGVDNIFIIVQTFQRDE
RLQNEEIHQQIGRVLGEVAPSMFLSSFSETVAFFLGALSTMPAVRTFSLFAGMAVFIDFL
LQITCFVSLFGLDIQRQESNRLDIFCCAKQKSINTDHSDGFLFRFFKHIYAPFLLNDWVR
LIVMSLFVGILSFSIAVLNKVEIGLDQRYSMPDDSYVLQYFESMGKYLHAGPPVYFVIEE
GHNYTSIEGQNPVCGGVGCNNNSLVQQIFSASQLDNYTRIGFPSSSWIDDYFDWIKPQST
CCRVYNNSGHEFCNATVVDESCVHCRPLTPEGKQRPIGEDFMTFLPMFLNDNPNSKCGKG
GHAAYGSAVNLIENNTGVGATYFMTYHTVLTTSTDFIDAAKKARDLAANMTESMGISDKG
YRIFAYSIFYVFYEQYLTIVKDTIFNLCVSLGSIFVVTTVLLGCDVWSAVTVCITISMIV
VNMFGVMWLWNISLNAVSLVNLVMCCGISVEFCSHIVRAFSVSLKKTKVERAEEALAHMG
SSVFSGITLTKFGGIVVLAFSKSQIFQIFYFRMYLAIVLLGASHGLIFLPVLLSYIGPPV
NKAKVSALSIQYTGTERQHLLKSR
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcccggggcggctcgatggcggcggcggcgtcgtcttacttctgactttactg
ggatttccgacgcactcggtattagcacaaaatgaaacttgtgtttggtatggtgaatgt
ggaacagatgaggcaactcaaaagaagtacaactgtaaatatgatgggaaaccaatacca
ctgcccaaaaaaggatatgacttactccaggaattgtgccccaattatttctatggaaat
gttaatctctgttgtgatgttcaccaactccagacacttaaggataacatgcagctacca
tttcaattcctgtccagatgtccatcctgtttccacaacttcatgactttctattgtgag
ctcacttgcagtccttatcagaatttgtttctcaatgccactaaatttcaacggtacacc
gagaacaaaaccagcatcactgaggtgcaatactacattggttcaagtttcacaaatgcc
atgtttaacgcctgcaaagatgttctttctccgtcaagtaatgaaaaagctctggggctg
ctttgtgggaaagatgcgaaagactgcaatgcaaccaattggattcagtacatgtgcagc
acaagcaatgctcagactcctttcaatattattccaatcttctctgataatcgtattgga
agaatgctccctatgaataacgagacaaaaggttgcaatgaatctctggatgatggatct
gatgcatgcagttgccaggactgttcactggtttgcggaccaaagccagtccctccacca
cctgctgttccatggaccatctttggtttggacgcgatggttcttataatgtgcttctcc
tattcagcatttatcatactccttgcaggaggagctcttggcatgtggtgttacaggaag
atgagtgttgcctctgaatatgcaccaattattggcaccagtggagctctttcaattaac
ttcagtcatgactcagataagataacctgttgtgaccggctaggtgcaaggtctgaggca
cttctgcgtcgtttattcacaaactggggctctttctgtgtgcgacacccagctccagtc
attgtcttatcacttgtagcagtatccatttgctcgtcaggcttgctatacctaaagata
acgactgatcctgtagaactctggtctgctccttccagtgaggcccgcaaagagaagcat
tactttgactcgcattttggacccttctttcgcactgagcagttgattattacagcccca
aacagatcagcaaccctttactcaccttatccatctggttcagacatattatttgggcct
cctttagccaaggatatccttgatcaggtgttggacttgcaaaatgaaattgaaaatctg
aaagcagaataccaaaatgaaactgtgatgttaaaggatatctgtttggctcctctggct
ccatataacaacaactgtaccatcttgagtgtgctaaactactaccagaacagtcatgat
gtccttaatcattctgttggtgatgagttctacgtgtttgctgattatcatacccacttt
ctgtactgcactaaagctccattttcacttaatgatacaaccatgctacatgattcttgt
ttgggcacttatggtggacctatctttccatggctggtgctaggaggatatgacaacgat
aactacaataatgcaacagcattagtagtaacatttcctgtgaataattactacaatgac
actgagaaactgaacaaagctttggcatgggaaaaagtacttattgcatttattaagaat
tatggcaactccaacctatccatttccttctcaactgagcgaagcattgaggacgaaata
aatcgtgaaagcaacagtgacgtctccacaattctcattagctatgcaatcatgttcgtt
tacatctcgattgctttggggcacatcaggagtgttcagagttttctggtggactcaaaa
atctctctgggtgttgctggtatctttattgtcctgagctcagtggcctgctcattagga
atcttcagctatgctggcatttccctcacactaatagttattgaggtcatcccatttttg
gtgttggcagtcggtgtggacaacatcttcattatagttcagacatttcagagagatgaa
cgtctgcaaaatgaagaaatccaccaacagatcgggagagttctgggtgaggtagctccg
agtatgtttctgtcatccttctcagagactgtggccttctttctaggtgctttatccacc
atgccagctgtccgtacattttcactctttgcaggaatggctgtattcattgacttcttg
cttcagataacctgctttgtaagtctctttggtctggacatccaacgtcaagagagtaat
cgcttggatatcttttgttgtgcaaaacaaaaaagcataaatacagaccattcagatgga
ttcctcttcagatttttcaagcatatctacgcaccatttttattgaacgattgggtgcga
ctcattgtgatgtctttatttgttgggatcttgtccttcagcattgcagtgttgaacaaa
gttgagattgggctagaccagagatattcaatgcctgatgattcatatgtactacagtac
tttgaatcaatgggcaagtaccttcatgcaggtcctcctgtctactttgtaatagaagaa
ggtcataactacacttccattgaaggtcaaaacccagtgtgcggtggagttggctgcaac
aataattcccttgtccaacagatattttctgcttcacaactcgacaactatacaagaatt
ggctttccatcatcatcctggattgatgactattttgactggataaagcctcagtcaacc
tgttgcagagtctacaataattctgggcatgagttctgcaatgcaacagtggttgatgaa
tcttgtgttcattgccgtccgctgactcctgagggaaaacagaggccaattggagaagac
ttcatgacatttctccctatgtttctgaatgataacccaaattccaaatgtggcaaaggt
ggacatgcagcgtatggttcagcagtaaatctgattgagaacaatacaggtgttggtgcc
acgtactttatgacttatcatacagtgctgaccacttctacagacttcattgatgctgca
aagaaggcacgtgatctggctgcaaatatgactgaatccatgggcatttcagacaaagga
tatcgtatttttgcttacagtatattttatgtattctatgagcaatacctcaccatagtc
aaggacaccattttcaacctctgcgtatcactgggatccatatttgtagtgactacagtg
ctgctgggttgtgatgtctggtccgctgtgactgtgtgcatcactatctctatgatcgtc
gtgaatatgtttggtgtcatgtggctatggaacattagcctgaatgcagtctccctggta
aatctagtcatgtgctgtggaatttcagtagagttctgcagccatattgtccgtgcattt
tcagttagcttgaagaaaacgaaagtggagcgtgcagaggaagcactggcacatatgggc
agctcggtattcagtggcattacactgaccaaatttggtggtattgtagtcctggctttc
tccaaatcccagattttccagatcttctacttcaggatgtacttggcaattgtactgttg
ggagcttcccatggcttaatattccttccagtattgcttagctatataggaccacctgta
aataaagccaaggtgtctgcattaagcattcagtacactggaacagaacgccagcacctg
ttaaagtcgcgatga
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