Callorhinchus milii (elephant shark): 103182427
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Entry
103182427 CDS
T03088
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmk03041
]
103182427 (ddx20)
Enzymes [BR:
cmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103182427 (ddx20)
Spliceosome [BR:
cmk03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
103182427 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
Motif
Other DBs
NCBI-GeneID:
103182427
NCBI-ProteinID:
XP_042198162
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MALATRKAAHRIDERPRTGDVLLSESVDFAALLLSQPVLGGLRDAGFERPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFSAIALDSLILENPATQVLVLAPTREIAVQIHSVITAIGI
KIEGLECHVFIGGTPLTLDKMRLKKCHIAVGSPGRIKQLIEIGYLLTAGIRLFVLDEADK
LLEEGSFQEQINWIYSSLPVNKQMLALSATYPECLAQHLTRYMRDPTFIRLNPTDPALIG
LKQFYKIVNSYPLPHKIFEEKVQHLLELFSKVPFNQALVFSNLHSRAQHLADILTSKGLP
AVCISGSMNQNQRLEAMAKLKQFQCRVLISTDLTSRGIDAEKVNLVINLDIPQDWETYMH
RIGRAGRFGTHGLAVTYCCRGEEENELGLIAQRCCLQLVRLPDPIPSGLLDEAMDWDTEM
LKVPSGEGLPGADASGFALAKAEPALPVKHRESPVGRPQPNSSTSTAAKPPAKWPPRPRK
VPAAEAGRGRRQAGALVPDHIREKVGSALAARGLVSGGRSRPEAGELSQISAEERAALQE
ALPKVPPLTAFKMAASRRGREESFIEIVEDYERFLRERIQRPVELVKQWRGPGRGGETEE
GEVEILELMGREENEALFLSRGDALRLYAPRKRVRPQGSGCDPSSDSESDSASSRSSGRE
ASPEEEEEETPPIPPAPSQRQLTAKLRPGKAGVAGRPSREPPPCAPPPPRTPPPAPARLR
AAEESRGDTRSPPDSLSEPRGEGAEGEGSLRGGRKTRSEGWAGAEIPGAERHRQRPAPGP
HSDRHQRPPTGRGGHSEYWRSYYQAWHQHCTGSRAASDGWLRAYQMNSVYLTELLKP
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggccacccgcaaggccgctcaccgcatcgacgagaggcctcgcaccggggat
gtgctgctgagcgagagcgtggacttcgcggccctgctcctgtcgcagcccgtgctgggg
gggctgcgggacgccgggttcgagcggccgtcgcccatccaactcaaggccatccccctg
gggaggtgcgggctagatctgatcgtgcaggcgaaatctgggactgggaaaacctgtgtg
ttttcagccattgccctggactcgctcattctagaaaacccagcaacgcaggtcctggtc
ctcgccccaacccgagaaatcgccgtgcagatccattccgtcattactgccatcggcata
aaaatcgagggactggagtgccatgtgtttatcggggggacgccgctaaccctggacaaa
atgcgcttgaagaaatgccacattgctgtggggtccccgggtaggatcaagcagctgatt
gagatcggttacctgctgacggctggcatccgcctgtttgtactggacgaagcggacaaa
ctgctggaggagggcagcttccaggagcagatcaattggatttactcctcgttgcctgtg
aacaaacagatgttggccttgtcagccacgtaccctgagtgtctggcccagcatttaacc
aggtacatgagggatcctactttcatccgcctcaatccgactgatccagcccttataggc
ttgaagcagttttacaagattgtaaattcctatccacttccccacaagatctttgaggag
aaagtgcaacatttactggaactgttcagcaaagtccccttcaaccaggcattggtcttc
tccaatctgcacagcagagcccagcacctggcagacattctcacctccaaaggcctcccc
gctgtctgtatctcaggcagcatgaaccagaaccaaaggcttgaagccatggccaaactc
aagcagttccagtgccgagtgctcatctccaccgacctgacgtccagaggaatcgacgca
gaaaaggtgaacttggtaatcaacctggacatccctcaggactgggagacgtacatgcac
aggattgggagagccggccgcttcggtacacacggtctggctgtgacttactgctgccgt
ggggaggaggagaacgaattggggctgatcgcccagcgttgctgcctccagctcgtgcgt
ttgccagatcccattccctcgggattattggacgaggcgatggattgggacacggagatg
ttgaaggtgccgagcggggagggtttgccgggcgctgacgcctcggggttcgctcttgcc
aaggccgagcccgctttgccggtgaagcaccgcgagtcgcccgtggggcgtcctcaaccc
aacagcagcaccagcaccgcggccaaacctccagccaagtggcccccaagacccaggaag
gtgccggcagccgaggccgggaggggacggcgacaggcgggagctctcgtccccgatcac
atccgggagaaagtggggagcgctctggccgcgaggggcctggtgagcggggggcgatcc
cgaccggaggcgggggagttgtcccagatctcggcggaggaaagggcagctctgcaggaa
gccctgcccaaggtcccgcccctcaccgccttcaaaatggctgccagccgcagggggagg
gaggagagcttcatcgagatcgtggaggattacgagcgcttcctgcgggagcggatccag
cggccggtggaactggtcaagcagtggaggggcccgggccgggggggcgagaccgaggag
ggggaggtggagatcctggagctgatgggccgggaggagaatgaggccttgtttctgagc
cgcggcgacgccctgaggctctacgccccccgcaagcgggtgagaccccaggggtccggc
tgtgacccttccagtgactccgagtccgactccgcgagcagccggtccagcgggcgagag
gcgtcgcccgaggaggaggaggaggagactccgccaattccacctgctcccagccagcgg
cagctcacagccaagctgaggcccgggaaggccggcgttgctgggagacccagccgggag
ccccctccctgtgcccctccccctccccgtaccccaccccctgcccccgctcggctcaga
gccgccgaggagagcaggggcgacacccggtctccccccgactccctctcagagcctcgt
ggcgagggagccgagggcgaggggtccctgcgcgggggccggaaaaccaggagcgaaggc
tgggccggagcggagattcccggggccgagcggcacaggcagcgaccggcgcccggtcct
cacagcgaccggcaccagcggccgcccacgggccggggggggcacagcgagtactggaga
agctattaccaggcctggcaccagcactgcacgggctcgagagcagccagcgacggatgg
ctcagagcctatcagatgaactcggtgtatctgactgagctgctcaagccctga
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integrated database retrieval system
