KEGG   Callorhinchus milii (elephant shark): 103182982
Entry
103182982         CDS       T03088                                 
Symbol
prpf4
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103182982 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cmk03041]
    103182982 (prpf4)
Spliceosome [BR:cmk03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    103182982 (prpf4)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EML ANAPC4_WD40 PRP4 WDR90_beta-prop_4th Beta-prop_DCAF4 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_Vps41 WD_LRWD1 WD40_like Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 103182982
NCBI-ProteinID: XP_007898379
UniProt: A0A4W3JCW1
LinkDB
Position
Unknown
AA seq 506 aa
MSDDEDIPLPKKFRIYYGSLEEKEKERIAKGEGGYLGKEAVKLGMDAGHINLSSGESFDI
EEHMSERQAEVLAEFERRKRARQINVSTDDAEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGADALKKTEKEEEAKKSRQEHQQTWYHEGPSTLKTARLWIAHYSLPKALKRLEEA
RANKEIPEASRTARQQELHKTLRGLNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLCK
LWGVPDCTVIRTLRGHSTNVGAIVFHPQATISLDEKDCNMASCAADGSVKLWNLESDEPI
ANIEGHTMRVARVAWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVYDIAFHND
GSLVGTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYSISFSPNGYHAATGSGDNTCKVWDL
RQRKCIYTIPSHQNLVSAVKFQPTDGHYLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKVM
GLDISXNGQLIATCSYDRTFKLWTSE
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtctgacgatgaggatataccactgcctaagaaattccggatttactatggaagcctt
gaggagaaggagaaagaaaggattgccaagggagaaggaggatatctgggaaaagaagct
gtgaagcttggaatggatgctggacatattaacttatccagtggagagtcctttgacatt
gaagagcacatgagcgagaggcaggcggaggtgctggccgagtttgagcgcaggaagcgc
gcccggcagatcaacgtatccacagacgatgcggaagtgaaggcatgccttcgagcgctc
ggcgagccaatcacactgtttggagaaggaccagcggagcgcagagaaagattgcgaaat
atcctctctgtggtgggcgctgatgccttgaagaaaactgagaaagaggaggaagcaaag
aaaagccggcaagagcatcaacagacctggtatcacgagggacccagcaccctgaagaca
gctcgcctctggatcgcccattattccctgccaaaagcgctgaagcgattggaagaagct
cgtgctaacaaggagattcccgaagcctctcgaacggctcgtcagcaggagctccacaag
actctccggggtctgaataacttctgcagtcagattggtgatgaccggcctatctcctac
tgccagttcagccccaactccaagcttctggttacagcttcctggagtggcttgtgcaaa
ctttggggtgttcctgactgcactgtcatccgtacgctgagaggtcacagtacaaatgtg
ggcgctatcgtgtttcacccacaagctacgatctcactcgacgaaaaagactgcaacatg
gcgtcgtgtgcagccgacgggtctgtgaaactctggaacctggaaagtgatgagccaata
gctaacatcgaagggcacacaatgcgagttgccagagtggcctggcacccgtccggaagg
tttctgggcaccacatgctatgaccactcctggaggctctgggatctggaggctcaggag
gaaatcctgcaccaggaaggacacagcaaaggtgtctatgatattgccttccacaatgat
ggctcgctagtgggaaccggtggcctggatgcctttggccggttgtgggacctgcggaca
ggtcgatgtatcatgttcctggagggacacctcaaagagatctacagcatcagcttctcc
ccaaacgggtatcacgcagcaaccgggagtggcgacaacacctgcaaagtgtgggacctg
cgccagagaaaatgcatttacaccatcccctcccaccagaacctggtgtccgcagtcaag
tttcagcccactgacgggcattacctgctgaccggtgcctacgataacacggccaaggtg
tggacgcaccccgggtggtcaccgctgaaaacactggctgggcacgagggcaaagtgatg
ggactagacatctccncaaacggccagctgatcgcgacctgctcttacgacaggaccttc
aagctctggacgtccgagtag

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