Callorhinchus milii (elephant shark): 103183689
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Entry
103183689 CDS
T03088
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103183689 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmk03041
]
103183689 (ddx46)
Enzymes [BR:
cmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103183689 (ddx46)
Spliceosome [BR:
cmk03041
]
Complex A
U2 snRNP components
U2 related factors
103183689 (ddx46)
Complex B
103183689 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
103183689
NCBI-ProteinID:
XP_042195846
UniProt:
V9K8N3
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPAEKRSKPGDVRGRSRSRERDRRRDRSRSRDRRR
SRSRERKRLRMPQRSRMSVVTSKRSRSRERRRSRSREKRRSNSRGRGRRSHSQPRSRSRS
KSKERRSKSKDRVDVSNETVKEKKKEEKDDEKDVSNFEQSKLEEEMRKRKERVEKWREEQ
RKKAMENIGEIKRELEEMKQGKKWSLEDDEDDEDEMIEGERKEEGEEDNEELDPLDAYME
DIKEEVKKFNIGSVRGGSEKKTGATVTKVMTVVTTKKPHCDLEKKKGELMENDQDAMEYS
SEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEAFRKNFYVEVPELAKMSPEEVNIYRL
ELEGIVVRGKGCPKPIKSWVQCGISMKILSSLKKQGYEKPTPIQVQAIPAIMSGRDLIGI
AKTGSGKTIAFLLPMFRHIMDQRPLEEAEGPVSVILTPTRELALQITKECKKFSKALGLR
VVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMF
DMGFEPQVMRVVENIRPDRQTVMFSATFPRAMEALARRILTKPIEVQVGSRSVVCSDVEQ
HVIVIEEENKFLKLLELLGHYQEKGSVIVFVDKQEHADALLKDLMRAAYPCMSLHGGIDQ
YDRDSIINDFKTGVCRLLVATSVASRGLDVKQLILVVNYSSPNHYEDYVHRVGRTGRAGN
KGYAYTFITEEQVRYAGDIIKALELSGNAVPPELEKFWNDFKEQQKAEGKTIKKSSGFSG
KGFKFDETEQVLANERKKLQKAALGLQDSDDEDTALDIDEQIESMFNSKKRVKDMAMPGA
AHVPVPSAGNAEKLEIAKRLALKINAQKNLGAEAQDVMQQATNAIMRGRTLQAPTVSAKT
IAEQKAEKINAKLNYVPAEKQEDDKQESAQTESFKRYEEELEINDFPQTARWKVTSKEAL
QRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESASELAVQKAKAEITRLIKEELIR
LQNSYQPTNRGRYKVL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggggagagaatccaggcattaccggaaacggtccgcgtcgcgagggcgttctgggagc
cgatccagaagtcgatcacccgctgagaagcggtcaaaacctggagatgtcagaggtcgt
tcacgcagcagggaacgggatcggaggagggatcgatctcgcagcagagacaggagaaga
tcacgatcacgggagagaaaacgactcagaatgccacaaagatccagaatgtcagtggtc
acatcaaaacggtccaggagtcgggagcggaggaggtctcgcagtcgagagaaacggaga
tccaacagtaggggccgaggccgcagatcccactcccaaccccgctcacgcagcaggagc
aagagcaaggagagacggtcaaaatctaaagaccgagttgatgtcagtaatgaaactgtc
aaagagaagaaaaaggaggaaaaagatgatgagaaagacgtcagtaacttcgaacaaagc
aaattggaggaagaaatgaggaaacgaaaggaaagagttgaaaaatggagggaagagcaa
cgtaaaaaggccatggaaaatatcggggaaataaagagggaacttgaagagatgaaacag
ggcaagaaatggagccttgaggatgatgaagacgatgaggatgagatgatagaaggtgaa
aggaaagaggaaggcgaagaagacaatgaagagttggatccattggatgcttatatggaa
gatattaaggaggaagtgaagaaatttaacataggaagtgtaagaggtggaagtgaaaag
aaaacgggtgcaacagttacaaaagtcatgactgtagtaaccaccaaaaaaccacactgt
gatttggagaaaaagaaaggagagttaatggagaatgaccaggacgcgatggagtactcc
tcagaggaagaggaagttgaccttcagacggcacttaccggctatcagacaaagcaaagg
aagctcctggagccagtggatcacgggaaaatagaatacgaagcatttcgaaagaatttt
tatgttgaagttcctgaacttgctaagatgagcccagaggaggtgaatatctacagattg
gaactggagggaattgtagttcgagggaaagggtgtccaaaacctattaaatcctgggtg
cagtgtggcatctccatgaagatattaagttcgttgaagaagcaagggtatgagaagcca
acaccaattcaggttcaggcgatccctgcaatcatgtctggacgcgatctgattggaatt
gccaaaactggaagtggcaaaaccatcgctttccttttacccatgttcagacacatcatg
gatcagaggccactcgaggaagcagaaggtccagtctctgtcatcctgaccccaactcgt
gaattagcccttcagattaccaaagaatgcaagaaattctcgaaagcattgggattgaga
gtagtgtgcgtttatggtggaaccgggataagtgagcagattgcagaattgaaacgagga
gcggaaatcattgtttgcactccaggtcgcatgatcgatatgctggccgccaataatggt
cgtgtgacaaatcttcgcagagttacctatgttgtgcttgatgaggcagacagaatgttt
gatatgggttttgagcctcaggtaatgcgagtagttgaaaacattcgaccggatcgacaa
acagttatgttctctgcaacattccctagagccatggaagctttggcacgtcgcatcctg
accaaacctattgaagtgcaagtgggcagcagaagtgtggtgtgctctgatgtagagcaa
catgtgattgtcatagaagaagaaaacaaatttctgaagttgctggaacttttaggtcat
taccaagaaaagggctctgtgatcgtgtttgtggataaacaggagcatgctgatgcctta
ctgaaggatctgatgagagcagcctacccctgcatgtcactacacggaggtattgatcaa
tatgaccgagacagcatcatcaatgattttaaaacaggagtgtgtcggttgcttgtggcc
acatcagttgcctcacgtgggctggatgtgaaacagctgattcttgttgtcaactacagt
tctcccaatcactatgaagattacgtgcatcgagttggacgtactggaagagctggtaat
aagggttacgcatatacattcattactgaggaacaagttcgttacgcaggggatataatt
aaggctttggaactgtcaggaaatgctgttccacctgagctcgaaaaattctggaatgac
ttcaaagagcagcaaaaagcagaaggaaaaactatcaaaaagagcagcggcttctcaggg
aaaggcttcaagttcgatgagacggagcaggttctggcaaatgaaagaaagaaactgcag
aaagctgccttgggtctccaggattctgatgatgaagacactgcacttgatattgacgaa
caaattgagagcatgtttaattccaagaagagagtgaaggatatggcaatgccgggagct
gctcatgttccggtgccatctgctgggaacgcagagaaactggagatcgccaagagactg
gcattgaagatcaatgcccagaagaacctcggtgcagaagcacaggatgtaatgcagcag
gctaccaatgccatcatgagaggacgcacgctacaggctcccaccgtctccgcaaagacg
attgcagaacagaaagcagagaagatcaatgccaaactcaactacgtgccagcagagaag
caagaagacgacaaacaggaaagcgcacaaacagaatcattcaaacgatatgaagaagaa
cttgagatcaatgatttcccacagacagccaggtggaaagtcacctccaaggaggctctg
cagaggatcagtgaatattcagaagcggccatcactatccgaggcacctacttccctccg
ggaaaagagcccaaagaaggcgagcggaaaatctaccttgctattgaaagtgcgagtgag
ctggcagttcagaaagctaaggctgagattacaagacttattaaagaagaactcattcga
ctgcaaaactcttaccagccaaccaaccgaggacgctacaaggttttgtag
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