Callorhinchus milii (elephant shark): 103184602
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Entry
103184602 CDS
T03088
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103184602 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmk03021
]
103184602 (pcf11)
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103184602 (pcf11)
Transcription machinery [BR:
cmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103184602 (pcf11)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103184602 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
103184602
NCBI-ProteinID:
XP_007900906
LinkDB
All DBs
Position
Unknown
AA seq
1816 aa
AA seq
DB search
MAEEAAAKADACKEYQSSLEDLTFNSKPHINNLTILAEENLKYSSEIVKLIEAQITKAST
SEKLPIMYLMDSIVKNVGGSYISLFAQNIVSTFACVFEKVDESTRKSLFKLRSTWDDMFP
LKRLYALDVKVNKLDPAWPIKPLPPNVNSSSIHVNPKFLNRSLEESATSSPTVVTPVSSA
KHNIAESQKNVIQEQEQFIRQQLLAKQKQLLELQQKKLELELEQTKAQLVASLASQQPDP
GVSLGHSKQHVPITKVSPMLSSVTAKPTPAPIKPLQQTSAQPDKSQSMHAHDTKVSNRDP
RINRLNQHSAQTKDPAKKDSLLQAEKFDKPANRTNSPTGEISANLKSENHTNTSKQEKDK
SCDKSLKKVSEGKSKLLSPVKNKLSVKSAKKADSEKGKSEINRRDPRLRKSSQDKSDNKS
EIKEKRRSAEKKVEEDHNKGTDRKSTPRNKTVNGTVLKHEKDGKEIEKDGSKSVGLNFRL
RARSSRSQSPRSRSPISRFVRQRGRLSPKRRRTSVSPLSKTVPEKEKPVKKHDEKQNADN
WEQDRKKTGKAEARDTRRSKRTREDRVQDPQGTRPETRNSPRMSPEPKENAENWHDPPSV
KRWKSGWEEAKSLHQKQETSTRTKLTYQQQRDAHAGNKGVLSPRTPRQQRMSVDANLQIP
KELTSANKRDLLRKANQRLANGEIGYEEFLVVAHQINQLFQYQEEKNRSSDSQWGGGKKL
KGETSSARSQTKNAKLSEAEMSYYEHMAKLKRTRVQLEQLQDPELCWKIKEDLYRESTGD
IRLIVKEGDDQGSRSPSTSSKPHLGSERHDTRDASHEKKVGEKRLSTEDARGHHSEGRHS
DRRKLSEGKSTRLSPVGDKPDKHGDRVSSVRKHPSPSVEEEKKQTDKHDTINYTSETLPV
KEVKSSEFPEDQVTSGNNWVESRTELQRQGSKHQLLLERELQEFGPRNRPDIKREETRSQ
CDHSEERSAFDPPPQRGDGLGENSRLRSGGLEISQRLRELTDGPGQSKPGNLERLRTDKS
IEPEAWEAERPWLPGRDGSPKCDGRIAGSRMRLDNLPGPGVLQRIDGAPELSGLRVEGHA
GQPGQRFEGSQPGQTISCFDNSQPGARFDGPSSHSGDPRLWVEGPTGRSGQSNFDGLGRH
SGQPGVRFDNPDSPLGQSRMHFDVLPSGVRNEGARTLQPGMRFDNPDARLGQLGVRFDSP
RPGHPSMRFDNPDVRIGQPGVRFDSPRPNLLGLRFDGPRSLQPGIRFDNPDSRMGQPGVR
FDSPRAAQPGVRFDGSGIRPGQPGIRFDNAHQGQPGLRFDGPGNHPRQSGMRFDSPVGHQ
VQHGIRFDGPHPRHPGVHFDGNPGFRFGAAAGHFDGHLGPQFDRGAAQPDPRINVPGHLF
NGHASSQFQGTVLTGQPGLRFNMAPGMHYNESPSHGGTMLGNSTYGLSGPCFDGRTPISQ
GLQGHRNIEPYDPANSNFYNRGHPTSLPGENTHQLPSVNTITSFPHNQPFSQVQQQYVPS
HTSVIQVQQGLPFAPRENHLGQLDVNELFAKLLSTGILKANPTETIQTQGESQAQPAVEE
EEEEEEEEDNEENIPDLTNFNIDELKQRYDSVINRLYTGIQCYSCGMRFTESQTDVYADH
LDWHYRMNRMEKDITKKVTHRKWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVIQRTQ
EAAKEKEFQSVPAGPAGVQEICEICQEPFEQYWDEDEEEWHLKNAVRVEGRTYHPACYED
YKNASITDSTPSPSEAPIENPLHSIIGIVKQEKLDSCETLDSTISCKNEESEDSSMLTDI
KTEIESDTAVVKLEKV
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaagcggcagccaaggcggacgcctgcaaagagtaccagtcgtcgctcgaa
gatctgactttcaacagcaaacctcacatcaacaacctgaccatcctggccgaagagaac
ctgaagtactcgtcggaaatcgtcaagttaatcgaagcacaaataaccaaggcttctact
tcagagaaactccctataatgtacctcatggattccattgtgaagaatgttggaggaagc
tatatatcgctctttgcacaaaacatagtttctacatttgcttgtgtttttgaaaaggtg
gatgagagcactagaaaaagtttgtttaaattacgttctacatgggatgacatgtttcca
ctgaagagactttatgccttagacgtgaaagtcaacaaactagatcctgcctggcctatt
aagcctttaccgccaaatgtgaacagttcaagcattcatgtaaatcccaagtttttaaac
agatcgcttgaagaatctgccacctcaagtcccacagttgttactcctgttagctcagct
aaacacaatattgctgagtcgcagaaaaacgtaatacaggagcaggagcagtttataaga
caacaactgttagcaaagcaaaagcagttacttgagttgcaacagaagaagttagagctg
gaattagaacagacaaaggcacagctggttgcttcacttgcctcccagcaaccggatcca
ggagtaagcctaggacattccaaacaacacgtaccaattaccaaggtctctcctatgctt
tcatcggtgactgcaaagcccactccagctccgatcaaacctttgcagcaaacgtcagca
caaccagacaaatctcagtctatgcatgcccatgatactaaagtatcaaaccgagaccct
cgcatcaatagactcaatcaacattcagctcagacaaaagatcctgctaaaaaggacagt
ctattgcaagcagagaagtttgataaaccagcaaacagaacaaatagccccactggtgaa
atttctgctaatttaaagagtgaaaatcataccaatacatcaaaacaagaaaaggataag
tcttgtgataaatcattaaagaaagtttcagaagggaaatctaaattgctgtcaccagtg
aaaaataaattgtcagttaaaagtgccaaaaaggctgattcagaaaaaggaaaatctgaa
ataaacagaagagatccaaggctgcggaaatcttctcaagataaatctgataataaatca
gaaataaaagaaaagcgaagaagtgctgagaaaaaagtggaggaagatcacaataaggga
actgaccgtaaatctacaccaagaaataaaactgtcaatggaaccgttttgaaacatgaa
aaggatggaaaagaaattgagaaagatggatctaaatctgtaggattaaattttagatta
cgtgcaagatcttccagatcacaatctccaagatcccgatcaccaatatcacgttttgtc
aggcaaagagggagactttcgccaaagaggagacgcacaagtgtttcaccactgtccaaa
acagtaccagagaaagaaaagccagtgaaaaaacacgatgagaaacagaatgctgataat
tgggaacaagatcgaaagaaaactggtaaagcagaagcaagagatacaaggagatcaaag
agaacaagggaggatagagtacaagatcctcagggtacacgccctgaaaccagaaactct
cctagaatgtcccctgagccaaaggagaatgcagaaaattggcatgatcctccgtccgtg
aaacggtggaagtctgggtgggaagaagctaaaagcttacatcagaagcaagaaacttct
acacgtacaaaacttacttaccaacagcagagagatgcacatgctggaaataaaggtgtt
ctgtcacctcgaacaccaaggcagcaaaggatgagtgttgatgcaaacttgcaaattcca
aaggagttaacatctgctaacaagagagatttattgagaaaagcaaaccaacgactggcg
aatggagaaataggttacgaagaatttcttgttgttgctcatcaaatcaaccagttgttc
cagtatcaagaggaaaagaaccggtcaagtgactcacaatggggtggggggaaaaagtta
aaaggagaaacctcatcagccaggtcacaaactaaaaatgcaaaattatctgaagccgag
atgagctattatgagcacatggctaaattaaaacgaaccagggtccaattggaacagtta
caagatccagaactttgctggaaaataaaagaggatctttatagggagagcacaggagat
atcaggcttattgtaaaggaaggtgatgaccagggtagcaggtctccaagcacgagtagc
aagccacatttaggaagtgaaaggcatgatacaagagatgcctctcacgaaaagaaagtt
ggtgaaaaaagactgtcaactgaggatgcacgtggccatcatagtgaaggaaggcattct
gacagaagaaaactcagtgaaggcaagtccacgagactttctcctgttggtgacaagcct
gataaacatggtgatcgtgtgtcttcagtacgaaaacatccaagtccttcagtagaagaa
gagaaaaagcaaactgacaaacatgataccataaactatacaagtgaaacattgcctgtc
aaagaagttaaaagttctgaatttcctgaagatcaagtaacatcaggtaataactgggtt
gagtcacgaacagagcttcagcggcaaggatcaaagcatcaactgctgctagaaagagag
ctccaagaatttggaccaagaaaccgaccagatataaaaagagaagaaacaagatctcag
tgtgatcattcagaagaaagatctgcttttgatccgccaccacaaagaggtgatggactt
ggtgaaaactcaagactgagatctggtggacttgaaatttctcagagacttagggaacta
acagatggaccaggacaaagcaagcctggaaatttggaaaggctccgaactgataaatct
attgaaccagaagcgtgggaggcagaaagaccatggcttcctggccgtgatggatcaccg
aaatgtgatgggcgcattgctggatctaggatgagattggacaatctccctggaccgggt
gttctccagcgaattgatggtgcccctgaactgtccggcttgcgggttgagggtcatgca
gggcagcctggtcaacgctttgaaggttcacaaccaggacaaacaatttcatgctttgat
aattcacagcccggtgctcgctttgatggcccaagcagtcactcaggggatcccaggttg
tgggttgaaggtccaactgggcgctcaggtcaatccaactttgatggtctaggcagacac
tcagggcaacctggagtacgtttcgataaccccgatagtcctctgggacaatccaggatg
cattttgatgtgttgccgtctggtgtgcgaaatgaaggtgcacgcacattgcagcctggt
atgcgctttgacaaccctgacgctcgcttaggacaacttggggtgcgctttgatagccca
cgcccaggccatcccagtatgcgttttgacaaccctgatgttcgtataggacaacctggt
gtgcgctttgatagtccacggccaaacctacttggtttacgctttgatgggccacgttct
ttacaacctggtattcgctttgacaaccctgacagtcgcatgggccaacctggcgtgcgt
tttgatagtccacgagcagcacagcctggtgtacgctttgatggctcgggtattcgtcca
ggacagcctggtatccgcttcgataatgcacaccagggtcagcctggactgcgctttgat
ggtccaggcaatcaccccaggcagtctgggatgcgctttgacagtccagttggccaccag
gtgcagcatggtatacgttttgatggtccacacccaagacatcctggtgttcactttgat
ggcaatcctggctttcgttttggcgctgctgctggtcactttgatggtcaccttggacct
cagtttgaccgtggtgctgcacaacctgatccaagaatcaatgttcctggtcacttattt
aatggacatgcaagttcacaattccagggaacagtattgactggacaacctggactcaga
tttaatatggctccagggatgcattacaatgaatctccaagccatggaggaacaatgttg
ggtaattcaacttatggactatcaggcccttgttttgatggtcggactccaatatctcaa
ggattgcaaggacaccgtaatattgagccgtatgatccagcaaatagtaacttttataac
agaggccatcctacgtctttaccaggggaaaatacacatcaactaccgtctgttaatacc
ataactagttttccccacaaccaaccttttagtcaagtccaacaacagtatgtcccttca
catacatctgttattcaggttcaacaaggactaccttttgcacctcgggagaatcatttg
gggcagttggatgttaatgagctgttcgcaaagctactctctacaggaatcctgaaggca
aatccaacagaaacaatccagactcaaggtgaatctcaggctcaacctgcagttgaggag
gaggaagaagaagaggaggaagaagacaatgaagaaaatattccggaccttaccaacttt
aatattgatgagctaaagcagagatatgatagtgttatcaacagattatacacaggtatt
cagtgctactcctgtggaatgaggttcacagaatcacagacagatgtttatgcagatcat
ttggactggcattatcgtatgaatagaatggaaaaagacattacaaaaaaagtgactcac
agaaagtggtactatagtttaacggattggatagaatttgaggaaattgccgatttggaa
gagcgcgcaaagagtcagttctttgagaaggtacatgaagaagttatacagagaacgcag
gaagctgcaaaggaaaaggaattccagagtgtacctgctgggcctgctggagtacaggag
atttgtgagatttgccaagagccgtttgagcaatattgggatgaagatgaagaggagtgg
catctgaaaaatgcagttcgtgtagaaggcaggacttatcatccagcctgctatgaagat
tacaaaaatgcttcaattacagattcaactccatctccaagtgaagcaccgatagaaaac
ccattgcattcaattattggcattgttaaacaagaaaaactggatagttgcgagaccttg
gattccaccatcagctgcaaaaatgaggaaagtgaagatagttctatgttgacagatata
aaaactgaaattgaaagcgatactgcagtggtaaaactagaaaaagtctag
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integrated database retrieval system
