Callorhinchus milii (elephant shark): 103184626
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Entry
103184626 CDS
T03088
Symbol
setx
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cmk
Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmk03021
]
103184626 (setx)
Enzymes [BR:
cmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103184626 (setx)
5.6.2.5 RNA 5'-3' helicase
103184626 (setx)
Transcription machinery [BR:
cmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103184626 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_30
AAA_22
SLFN-g3_helicase
ResIII
RNA_helicase
Rad17
Helicase_RecD
nSTAND3
AAA_16
PEARLI-4
Motif
Other DBs
NCBI-GeneID:
103184626
NCBI-ProteinID:
XP_007900944
UniProt:
A0A4W3ISM7
LinkDB
All DBs
Position
Unknown
AA seq
2785 aa
AA seq
DB search
MSTCRWCTPRGQTTVQFLLQYCSGELSSQEVKAANEDLCYCLECVVEYHQARDEVHAKHK
ALCKLETKRLIDHFENALKAELEDDELFLIENEQEIQLCGYTGPDLENNLRVPILEILKY
PYLLLDEGLSQLCIEALTKMEKVNFSFQAFDKHPGIYLLLVHPNETVRKWAILTARSLGK
VERDDFYDLQEVITCLLRVIELDLFENSDIYNSVDTETTLILLPPHLYDITNHKNYWLGI
CMLFMVLDEQAMDSLLLAQDKQNDFMNSILNTMKKSEEDDTSDPFWPALQCFMVILDRLG
SKVWGQLIDPMEAFQTITGSHSYNKEIENIRNNVSSKRIKSDLDDGDGDYDDNLVSCSQI
VYDYNTKRQNKDTGWKNAICPDYYPNMYDEMQTLVHVLQCDIGQDMRVHNSTFLWFIPFV
NSVMDLKNLGVVYIGEVVHHIHSEIKDVLDRKVNSCDKVAGFFILIMVCIVELHRNKKNL
HMLWYSSQKWVDMLVKCANLPAWVFNQNKEKAGTPGNCRITSTSLAAKSSGVCSSVTNSV
QQACVQLVRCFLREGCQSQQRGTSQQFLDKLNLQLRNTFILGWQLSHKEQQELKTCLIEI
VKLAKNQVSEVKQPSRVGRGGVLPCSLIKQEKVERSVCERITEYCNSGPEPPDSAVSRSI
TFQSNVVQEKPVNSRSVENLCEVPGASESSVEPAMTPVHSCDSSTFPQETSSAKVSFDIV
TDDELREMFKETSDPVRKESLGDPHSKYKPAAEHTDSSTRGSGPISHPEDNGQIKPLPST
DGAEPMRESTWRLVSTKIEDDHVGAKVPTLCNSAQVIPESPHKANVPCAKPEKSNMFKLD
RARLLHLNNKMKIFNRKTKMDKEEASSPRKESTDTDCANSRVGRGQSGGELSDWDSNLKP
KEPIRGGDCTPDTSMPHQEQTLASVSADRRKSPNSDGTLSSKGTTDPHSPKTSCASPKPG
QCSPSRLDDDDDDDSDIPFDALRIKLKKRHNVDVCLLTNSEINRDLTRLSLAASSKCANF
SDGLTQESCVMQFPETINRKVKGSFCVQKGEIPKSSSFVHDLTTNENRRIIVADSHSPNL
KGSTVKLEACDAKNPDGIGDSIPGTTHSEGNKASNHGTSDTTFSKHVSHPKESVVFEEDD
SQFFEFETEEEIYSVWEDTQPQEGQATVAKVTVVEPSSTTYHQPGYSDVDLDILNEWGYD
TDYATDEMIEKVASRAELHLEQPQPVLRMSSSSSGSTTDEEDSDESHVNKSEASHAVSAF
YSASDLLKGKHREKNILTSDPNRKGFLLPGENKQKLVSANTGAPKGQLAKKLPVKQATGE
SRKSDTFSLPLSKAKEKSSLQVKARDKYSTQASPRKDLSKFSPSEKKANSSAHSRKGAGN
VCPSSNARHSSLEGKSSGGSFTTGFKSPSKDLQTDKPSDKPPLSLQQKKVRKRPEPTSLV
EKLGLKKKTRKAFDLSQGSLDSLNELRNYGQAKGTIEHTRSKKTKLISPQKLTTCKNLRL
LASQDRQYLRQAKHSSTLKKRKETKKGTVSHPRSSQLLPTEEAGRGSSFSFSSMSENHSG
HFTSREKHSNPTMAITVSVEFRSVGSQTGPAPRNLYCMIGDEDNDHHDFNLTQHDPVDKD
LDNENQEDVDAFNLTQRDPVDMDLDSEDAKEEGDHGNSKEEAGCQQLEHADPSVNAEILK
KKQPPLPGPKSDVVFATPALPVSLSKSSRATTSKRFASSSTSRNAQLASEMEMLPNCKIK
QVGKPLLPKPAESKLLVSRPFPFPKPVPTTNILRALKGVNAMASASPPAMPTRTPPSYAA
QPHVRFKPLRDPLCLKVDLADRQNRDASYLIKDVLKWTYQMFDSLSQFGPPDCLCEFAPR
EVPQKFSSYEEYFRVYYPLMMLNTFEQLAKEWTESRQSHRLIQNSLTLKNHWVQEQIYRA
EFQVSLHDTNFNKHQQPKEDDVVFLWLLQSHIPYLQDEMVDGTPEVHLGHISRASYSSDG
RGSTLHLSVQTRGNVSAVKSQPIKCEVIGSLVTTIRQFKALLFLHKTPLALPVISISSPF
FTQRDLVDDAKWSSANEYNEFQQRAINVAYTMVKQHSRIPKICLIQGPPGTGKSKTIVGF
LHRLLNEEEENVEPVMSRNPRTKRTRILVCAPSNAAIDDLMKKIILDFKSKSKDKNNCLG
NCGDVNLVRLGLEKSISSDVVKFSLDYQVDYKIKKNQPGVDQQIQWRKQYLDKRLDELGR
QCAIMKKHREQIVKLTEERRKLDMERQKLGRTMKEHHRQMQDVQLNIILESHIICCTLST
SGGGLLEMAFRKLGHEPFSCVVVDEAGQSCESETLIPLVYRCPKLILLGDPEQLPPTIIS
MKARGFGYGRSMMQRLQKGLYDDVKQSGVRQQPHVLELLTQYRMHPDICLFPSKHIYGGK
LKTNKTVEMQRCSLSWPFEPYMLFDVIDGCEIRKKGSFSNLQEVKLVIALITLIAEQQKG
KCNNIAVITPYNAQKQEIQNQIEQACRKGLDQGRAIQVGTVDGFQGCEKDCIIVTCVRAN
NQQANIGFLADRQRLNVTITRARFSLFILGHLKTLTDSKDWNALIQDAQRRGAIVKTCES
DYRKDCRKVMKPRPAFQRALSVQGTGDRKAVPELLRRASIPMSCESTKRVEQTLKPPAPS
LPVDTVHPQPGPAQKPADDRPRDPRLARKLGAQTKDVGPQLEEASTRWPNPPDAHTPLAS
RGQRVPRPSLPGASCQAAVGRRNETSSSLASRSCASAFGNNRDNRDRHRHSHSARPQTQG
QEAKRRRDDSSAGEQGYSEMKRKRK
NT seq
8358 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgtgccgttggtgcaccccaagaggccagacaaccgtccagtttttactccag
tattgttcgggtgagctctcctcacaagaagtgaaagcagccaatgaagatctctgctac
tgcttggagtgtgtggtggaatatcatcaagcacgcgatgaagtccatgcaaaacacaag
gctctgtgcaaactggagaccaagcgtttgattgaccattttgaaaatgctttaaaggcc
gaactggaggatgacgagttgtttttgattgaaaacgagcaagagattcagctctgtggc
tacacggggcccgacttagagaacaacctgcgggtccccatcctggagattctcaagtac
ccatacctgctgttggacgaaggcctcagtcaactatgcattgaggctcttacaaaaatg
gagaaggtgaatttctccttccaggcatttgataaacatcctgggatctacctactgctg
gtgcatcctaatgaaacggttaggaaatgggcgatcctgactgccaggtctctggggaag
gtggagcgagatgatttctatgacctacaggaagtgatcacctgcctactcagggtcatt
gagctggatctctttgagaattctgatatctacaactctgttgacacagaaactaccttg
attctcctgccaccccatctatatgacataaccaaccacaagaactactggcttggtatc
tgcatgctgtttatggtgctggatgagcaagcgatggactcgctgctccttgcccaagac
aagcagaacgactttatgaactccatcctgaacaccatgaagaaaagcgaagaggacgac
acttctgatccattctggccggccttgcagtgcttcatggtaatcctcgatcgacttgga
tcaaaggtgtggggtcaactcattgacccaatggaggcattccagaccattaccggcagc
catagctacaacaaggagatcgaaaacattcgtaacaatgtgagtagcaaaagaataaag
agcgatttggatgatggtgatggtgattatgatgacaacttggtttcgtgcagccagatt
gtttatgactacaataccaaaaggcaaaacaaggatactggatggaagaatgcaatatgc
ccggattattatccaaatatgtacgatgaaatgcaaactctggtgcacgtgcttcagtgt
gatatcgggcaggacatgcgagtccacaacagtaccttcctctggttcatccccttcgtc
aattctgttatggacttgaagaacctgggcgtggtgtacattggggaggtggtgcaccat
atccactccgagatcaaggacgtcttggaccgcaaggtcaactcctgtgacaaagtggcc
ggctttttcattctgatcatggtgtgcatcgtggagctgcacaggaacaagaagaacttg
cacatgctgtggtacagttcgcagaaatgggtggacatgctggtgaagtgcgccaacctc
cccgcctgggtgttcaaccagaacaaagagaaagcggggacgccgggcaactgcaggatt
acgtccacctcgctggccgccaagtcctcgggagtttgttcctccgtcaccaactccgtc
cagcaagcttgcgtccagctggttcggtgtttcctgagggagggctgccagtctcagcag
agaggcacgtcacaacaattcctggataaactgaacctgcagctaaggaacactttcatc
ctgggctggcaactgagccacaaagaacagcaggaactaaagacctgcttgatagaaata
gtcaaactggcaaaaaatcaagtgtctgaagtgaagcaaccgagcagagttggtagagga
ggcgtcctaccttgctctctgattaagcaagagaaagtggaacggtcggtgtgtgagagg
ataacagagtactgtaacagtggtcctgaaccaccagatagtgcagtatcccgaagtatc
acctttcagtcaaatgttgtccaagaaaagccagtgaattctaggagcgtagaaaatctt
tgtgaggttccgggggcgtcagagtcgtctgtcgaaccagccatgacccccgtccactcg
tgtgatagcagtacattccctcaggagaccagctctgctaaagttagttttgatatagtt
acggatgacgaattgcgtgaaatgtttaaggaaacctctgatcccgtcagaaaggagtct
ctgggggatccccacagcaaatacaagccagcagcggaacatacggactcatccacgcgg
ggctctggtcctatttctcaccctgaagataatggccaaataaaaccacttccctcaact
gacggcgctgagccaatgcgagagagcacgtggcgtcttgtctctacaaaaattgaagat
gaccatgttggtgccaaggttcctacgctgtgtaattccgcacaggtcatcccggagtcg
cctcacaaagccaatgtgccttgcgctaagcctgaaaaaagcaacatgtttaagttggat
cgagcccgactgttgcatctgaataacaagatgaagatcttcaatcgcaagacaaagatg
gataaagaagaagcaagctcccctcgtaaagaaagcacggacacggattgtgcaaactca
agggttggtcgtgggcaatcaggtggcgagctgagtgattgggattccaacctgaagccc
aaggaacctatccgaggtggggactgtacaccagatacgtcgatgcctcatcaggaacaa
acactggcttcagtttctgccgatagacgcaagtcaccaaattcagatggtacattgtct
tcaaaaggcacaacagatcctcacagtccaaaaacttcttgtgcctcgccaaagccaggt
cagtgcagtcctagcaggttggatgatgatgatgatgatgacagtgacatcccatttgat
gcattaaggattaagctgaagaaaaggcacaatgttgatgtctgcttactaactaattct
gagatcaatcgggatcttactcggctctcgctggcagcttcctccaagtgcgctaatttc
tctgacggtttgacccaggagtcttgtgttatgcagtttccagagacgattaataggaaa
gttaaaggttccttttgtgtgcaaaagggagaaatccccaagtctagttcatttgttcat
gacttgactaccaacgagaacagaagaataattgttgctgattcacactcgccaaacctg
aagggcagcacagtaaaacttgaggcatgtgatgcaaagaatccagatggtattggagat
tcaatcccgggcaccacacattctgaaggaaataaagcctcaaaccacggtacctctgac
accacattcagcaaacatgtaagtcatccgaaggaaagcgttgtatttgaggaagacgat
tcgcagtttttcgagtttgaaactgaagaagaaatctattctgtttgggaagacactcag
ccacaggaagggcaagccacggtggccaaagtgacggtggtggaaccttctagtaccacc
tatcatcagccagggtacagcgacgtagacctggacatactgaacgagtggggctacgat
accgattatgcaactgatgaaatgattgagaaggtggccagcagggcagaacttcacctg
gagcaaccacaaccagtgctgaggatgagcagttcctcttctgggagtacaaccgatgaa
gaagactcggatgaatctcacgtcaacaagagcgaggcttcacatgcggtgtccgctttc
tactccgcatctgaccttctgaaaggaaaacatagagaaaaaaacatcttaactagcgac
ccgaacagaaaaggtttcctacttccaggcgaaaataagcagaaacttgtgtctgcaaat
acaggagcacccaagggtcagttggcaaaaaaactgcctgtgaagcaggcgacgggtgaa
agtaggaagtctgatacgtttagtttaccactttccaaagcaaaagagaaaagctcatta
caggtcaaggcaagagacaagtactcaacacaggccagcccaagaaaagacttaagcaag
ttcagcccaagcgagaagaaggcaaactcgagtgctcactcgaggaagggtgcgggaaat
gtttgcccaagtagtaatgcacgtcactctagcctggagggaaaaagctctggaggatcg
ttcacaactggcttcaaatccccttccaaggacctacagacggacaaaccgtcagacaaa
cctcctttgagtttacaacagaaaaaggtccgtaaacggcctgaaccaacatcattggtt
gagaaactggggctcaagaagaagacccgcaaagcctttgatctctcccagggcagtctt
gatagcttgaacgaactgcgtaattacggtcaagcgaagggcaccattgagcatacccga
agcaagaagaccaagctgatttcacctcagaaattgaccacctgtaaaaatctacggctg
ttagcttctcaagatcgccagtacttgagacaggctaaacactcgagcacactgaaaaag
aggaaggagacgaagaaaggcacagtttcacaccctcggtcttcccagctgttgcccaca
gaagaagcaggacgtggcagttctttctcattctctagcatgtcagagaatcacagtggc
cattttacgtctagggaaaagcacagtaatccaactatggccatcacagtttctgtagag
ttccgcagtgtaggaagccagacggggcctgcaccaaggaacctatattgcatgattgga
gatgaggataacgaccatcatgacttcaacttaacccagcacgatcctgtcgataaggac
ttggacaatgaaaatcaggaagacgttgatgcattcaacttgacccagagagatcctgta
gatatggacctggatagtgaagatgccaaagaagaaggcgaccatggcaattcaaaagag
gaggctggctgtcagcagctagaacatgcagatccatctgttaacgcagagatcttaaag
aagaaacagccacccctacccggaccgaaatctgacgtagtattcgccacgccagcgttg
cctgtctctctctcaaagagttccagagctacaacctccaagcggtttgcctccagctcc
acctcccgaaatgctcagcttgcttccgaaatggagatgctaccgaattgtaagattaaa
caagtcggtaagcctctgctaccaaaaccagctgagtcgaagcttctggtgtccagaccc
tttccattccccaaacccgtccccacgaccaacatccttcgagcactgaaaggggtaaac
gccatggcatcggccagccccccggcaatgcccactaggactcctcccagctacgctgct
cagccccacgtaaggttcaagccactgcgggatccgctctgcctcaaagtggacctggcc
gaccggcaaaaccgagacgcctcgtacttgatcaaggatgtcctgaagtggacctatcag
atgtttgactcgctcagccagttcggacctcctgattgcctgtgtgagtttgcgcccaga
gaggtgccccagaagtttagttcatacgaagagtatttccgtgtctactaccccttaatg
atgctcaacacgtttgaacagctcgctaaagagtggacagaatccagacagtcacacaga
ctgatccagaactccctcaccctgaagaaccactgggtgcaggagcaaatatatcgcgca
gagtttcaagtttcattacatgacaccaacttcaataaacatcagcaacccaaggaagat
gatgttgtgtttctctggctgctccagagtcacattccatacttgcaagatgagatggtc
gatggcactcctgaggttcacctcggccatatctcaagggcatcttattcttcagatggg
cgaggatctacactacacctctctgtccagacacgtgggaacgtcagcgcagtgaaaagc
cagcccatcaagtgtgaagtcatcggctcccttgtgactaccatccgacagtttaaggcc
ctgctctttctgcacaagactcctctggctctgcctgtcatctcaatcagttccccattc
tttacgcagagagacttggtggacgatgcaaagtggagctccgctaatgagtacaatgag
tttcagcagagagccatcaacgtagcatacaccatggttaaacaacattcccgaattccc
aagatctgcctcattcaggggcccccgggcacagggaaatctaagaccattgtgggtttc
ctgcatcgtttgctgaatgaggaagaagagaatgttgaacctgtgatgagcaggaacccc
aggactaaacgtaccaggatccttgtgtgcgctccatcaaacgcagccattgacgacctc
atgaagaaaatcatcctcgatttcaagtccaaatccaaagacaagaacaattgcttggga
aactgcggggacgtcaacctggtgcggctgggtcttgaaaaatccatctcatctgacgta
gtgaaattcagtctggattaccaagtagactacaaaattaagaagaaccagcctggtgtg
gatcagcagattcagtggcgcaaacaatatctagacaagcggctggacgagctggggagg
caatgtgccatcatgaaaaaacacagagagcagattgtgaagttaactgaggagaggagg
aaattggacatggagagacagaagcttggtcgcactatgaaggagcatcaccgtcaaatg
caggacgtgcagctgaacattatcctggagtcacacatcatctgctgcaccctgagcacc
agcgggggcgggctgctggaaatggcgttccgcaaactgggacacgagcccttcagttgc
gttgtcgtggatgaggcagggcagtcatgtgaaagtgaaacattgattcctctcgtatat
cgatgcccgaaactcatcctgctgggagaccccgaacagctgccaccaaccatcatctcc
atgaaagcgcgggggtttggctacgggcgatcgatgatgcagcggctacagaagggtctg
tacgatgatgtgaagcagagtggtgtccggcagcagccacatgtgctggagctgctcacg
cagtaccgcatgcatcctgacatctgcctgttcccctccaagcacatctacggaggcaag
ctaaaaaccaacaaaaccgtggagatgcaacggtgttctctcagttggccttttgagcca
tacatgctgttcgatgtgatcgatggttgtgaaatccgcaagaaaggttctttcagcaac
ctacaggaggtgaagctggtgatagctttgatcactctgattgctgagcagcagaaaggc
aaatgtaataatattgcagtgatcaccccgtacaatgcccaaaaacaggagattcagaat
cagattgagcaagcctgcaggaaaggcttggaccagggcagggcgatacaagtggggaca
gtggatggcttccaaggctgtgagaaggattgtatcatcgtcacctgtgtccgagccaac
aaccagcaagccaatatagggttcctggccgatcgacagcgactgaatgttaccatcact
cgagcccgcttcagtcttttcattctggggcacctgaaaacactgacggacagtaaagac
tggaacgctttgattcaggatgcccaaaggagaggggccatcgtaaagacatgtgagagc
gactacaggaaagactgcaggaaagtcatgaaacctaggccagctttccaacgagccctt
tcagttcagggcacgggggacagaaaggctgtccctgagctattgcggagagcgagcatt
cccatgagctgtgagtcaaccaagagagttgagcaaacgctgaaaccaccagccccttct
ctaccggtggatacagtacacccccaacctggtcctgctcagaagccggctgacgatcgc
ccgagggacccgcggctggcccggaaactaggagctcagaccaaggacgtggggccacag
ctggaagaggcctcgactcgatggccaaatccaccagacgcacacacgcccctggccagc
agggggcagcgcgttcctcgtccgtcgctccctggggcttcttgccaggcggccgttggc
aggagaaacgagacttcctcctcccttgcctccaggagctgtgcgtccgctttcggtaac
aatcgggacaacagagacagacaccgacactcacactcggccaggccccagacacagggg
caggaggcaaagaggagaagggatgacagcagtgcgggggagcaaggttacagcgaaatg
aagcggaaacggaaatga
DBGET
integrated database retrieval system
