Callorhinchus milii (elephant shark): 103185655
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Entry
103185655 CDS
T03088
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cmk
Callorhinchus milii (elephant shark)
Pathway
cmk03015
mRNA surveillance pathway
cmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103185655 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
103185655 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmk03019
]
103185655 (pabpc4)
03041 Spliceosome [BR:
cmk03041
]
103185655 (pabpc4)
Messenger RNA biogenesis [BR:
cmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103185655 (pabpc4)
mRNA cycle factors
Stress granule specific factors
103185655 (pabpc4)
Spliceosome [BR:
cmk03041
]
Complex C
Other components
Complex C specific factors
103185655 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_occluded
RRM_5
RBD_RDR6
TEX47
Nrf1_DNA-bind
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
103185655
NCBI-ProteinID:
XP_007902469
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MMTAAGASYPMASLYVGDLHSDVTEALLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPPDAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGEDMDDDRLKEMFDKFGKTLSIKVMTDLNGKCKGFGFVSYD
RHEDASKAVEEMNGKELNGKLLFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFAPFGSITSAKIMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRITGMRAMPANTIINQFQPAAGGYFMPAVPQAQSR
ATYYAPNQMAQMRPNPRWQQQQTRPQGFQAVPNALRQGGPRPSLRHLSPAGTTPGPRGMP
NAQRMGVTTVQNMAHRPGIAGPPPRAVTPYKYATTVRNPHQPLVQSQLGGQQAPQPAVLV
HGQEPLTTSMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLES
PESLRSKVEEAVAVLQAHQAKKEATQKVAVVVAAS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccgcggctggggccagctaccccatggcctctctgtacgtgggggaccttcac
tctgacgtgacggaggcgctgctgtatgagaagttcagcccggccgggccggtgctgtcc
atcagggtttgtcgggacatgatcacccggcggtcactgggctacgcttacgtcaacttc
cagcagccccctgacgctgaacgagcgttggataccatgaactttgacgtcatcaagggc
aagccgattcgcatcatgtggtcacagcgtgacccttcattgaggaaatccggggtgggg
aacgtgttcatcaagaacctggacaaatccatcgacaacaaggctttgtacgacaccttc
tcggcatttggaaatatcttgtcttgtaaggtggtgtgcgatgaaaatggctccaaagga
tacgcctttgttcactttgagacccaggacgcagcagacagagccattgagaaaatgaac
ggcatgttgctgaacgatcgcaaagtatttgttggccgttttaagtcccgtaaagaaagg
gaggccgaactgggagcaaaggccaaagagttcaccaatgtttacatcaaaaactttggc
gaggacatggatgatgatcggctcaaagaaatgtttgataaatttggcaaaaccttaagt
atcaaagtaatgaccgatctaaacggaaagtgcaaaggctttggctttgttagctatgac
aggcacgaagatgcttccaaggctgtggaagaaatgaacgggaaggagctgaacgggaag
ttgctgtttgtcggccgggctcagaaaaaagtggagcgccaggctgagctgaaacggaag
tttgagcagttaaaacaggagcggatcagcaggtaccagggagtgaacctttacatcaaa
aacttagacgacacaatcgatgatgaaaagctaaggaaagagtttgcgccgttcggctca
atcaccagcgccaagatcatgttggaggatggccgcagcaaaggtttcgggttcgtctgt
ttctcgtctcccgaagaagccacgaaggccgtgacggagatgaacgggcggattgtcggc
tccaagcccctgtacgtggccctggcccagaggaaggaagaacgtaaagcgcacttgacc
aatcagtacatgcagaggatcacggggatgcgggcaatgccggccaacaccatcatcaac
cagttccagccggcggccggtggctacttcatgccagctgtccctcaggcacaaagcaga
gccacctattacgctccaaatcagatggcgcaaatgagacccaatccacgttggcaacag
caacaaaccagacctcaagggttccaagctgtgcccaacgccctgcggcagggtggcccc
cggccatctctgcgccacctctcgccagcgggaaccactccggggcctcggggaatgcca
aacgcacagaggatgggagtgaccacggttcagaacatggctcatcgccctgggattgcg
ggtcctccaccacgggctgtgacaccgtacaaatacgccacgacagtccgcaacccgcat
cagcccctcgtgcaatcccaactcggggggcagcaggcccctcagccggctgtgctggta
catggtcaggagccattgacgacctccatgcttgctgcagccccacctcaggagcagaaa
cagatgctgggtgagcgcttgttcccgttgatacagaatatgcatccttccctcgcgggg
aagatcaccggaatgcttctggagatagacaactccgagctgctgcacatgttagagtct
ccggaatcgcttcgatccaaggttgaggaagctgtggctgtgctacaagctcaccaggcc
aagaaagaggctactcagaaagtcgctgtggttgttgctgcatcttaa
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integrated database retrieval system
